Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1180 ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAATACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTAGTCTTCGGCGGCTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCTGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCATGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTCAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTTCGCAAGATTAACGACGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCATTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACACGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGGCGACGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1281 45.9 MMGPPPQTAAPSASAIIHVSAWDEKDSIPVRLASLRRLLGSVFRFDWEIGTERGEEKKGKGIFLAMAPSFDLAVSNLLCAEENCIFDNNDDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDSDDGLLFMSDECLIEMVEKETHHLPVDGYLMKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIQRMELLVLTTLGWRMQAVTPFSFIDHYLRKINDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSLDPERAIPLLIQQLQMERVLKCLNLINDTFLTCGGGMVKDSRVATSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23697968 23701862 - CePI673135_08g011800.1 Cec08g1180 209822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1180 426 Pfam Cyclin, C-terminal domain 267 359 IPR004367 -
Cec08g1180 426 CDD CYCLIN_AtCycD-like_rpt1 164 262 - -
Cec08g1180 426 Gene3D - 137 339 - -
Cec08g1180 426 SUPERFAMILY Cyclin-like 249 360 IPR036915 -
Cec08g1180 426 SMART Cyclin_C_2 267 392 IPR004367 -
Cec08g1180 426 FunFam D6-type cyclin 264 353 - -
Cec08g1180 426 Gene3D - 148 265 - -
Cec08g1180 426 FunFam D2/4-type cyclin 148 263 - -
Cec08g1180 426 SMART cyclin_7 170 258 IPR013763 -
Cec08g1180 426 Pfam Cyclin, N-terminal domain 138 264 IPR006671 -
Cec08g1180 426 SUPERFAMILY Cyclin-like 129 264 IPR036915 -
Cec08g1180 426 MobiDBLite consensus disorder prediction 399 420 - -
Cec08g1180 426 CDD CYCLIN_AtCycD-like_rpt2 267 355 - -
Cec08g1180 426 PANTHER CYCLINS 136 332 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1186 Cec-Chr2:27972102 Cec08g1180 Cec-Chr8:23697968 9.50E-30 dispersed
Cec05g2245 Cec-Chr5:33906360 Cec08g1180 Cec-Chr8:23697968 1.80E-33 dispersed
Cec08g1180 Cec-Chr8:23697968 Cec10g1023 Cec-Chr10:22983748 1.60E-48 dispersed
Cec05g2734 Cec-Chr5:37842827 Cec08g1180 Cec-Chr8:23697968 1.00E-44 transposed
Cec09g2170 Cec-Chr9:38626386 Cec08g1180 Cec-Chr8:23697968 6.30E-48 transposed
Cec04g1542 Cec-Chr4:34912459 Cec08g1180 Cec-Chr8:23697968 1.90E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1180 K18810 - csv:101216206 617.846