Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1183 ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGACTGGAATTCGATACAATGGAGTCGACAACATGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTTCATGGGTGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCAACGACACACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAATCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACATTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGACAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCGACTACAATCTGTATGCATGGGTCCCCGGCTTTATTGGAGATTATCGTTACGATGCTCTCATCAACATTACAGAAGGCAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGCCTGTGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACCGTTGGTGTCAGCGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACAGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAATGTCGACAACGAAGCAACTTACAAGCTTCGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTACAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGAGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACGGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACCGGCCCTTTTCAAGCCATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA 1926 48.7 MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNMLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSNDTLQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYISEDLIPADGAFVGLATPGDVGSWQRDSKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENRTYKGTTWQVKFKLDNVDNEATYKLRVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23723706 23729987 + CePI673135_08g011830.1 Cec08g1183 209825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1183 641 CDD RGL4_N 8 293 - -
Cec08g1183 641 SUPERFAMILY Galactose mutarotase-like 11 293 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cec08g1183 641 Gene3D - 439 629 - -
Cec08g1183 641 Gene3D - 5 301 IPR014718 GO:0030246(InterPro)
Cec08g1183 641 Gene3D - 329 429 - -
Cec08g1183 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Cec08g1183 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cec08g1183 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cec08g1183 641 SUPERFAMILY Starch-binding domain-like 330 430 IPR013784 GO:0030246(InterPro)
Cec08g1183 641 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cec08g1183 641 CDD RGL4_M 332 431 IPR029413 -
Cec08g1183 641 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Cec08g1183 641 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
Cec08g1183 641 CDD RGL4_C 443 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1183 Cec-Chr8:23723706 Cec11g1529 Cec-Chr11:29542643 8.40E-283 dispersed
Cec04g1896 Cec-Chr4:37448438 Cec08g1183 Cec-Chr8:23723706 3.60E-201 transposed
Cec11g1528 Cec-Chr11:29520212 Cec08g1183 Cec-Chr8:23723706 1.50E-251 wgd
Cec04g1520 Cec-Chr4:34722312 Cec08g1183 Cec-Chr8:23723706 3.10E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1183 K18195 - csv:101215720 1242.64