Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1191 ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGCGGCTGACAACGGGAGACATACGACAATTGACCAGATCATGCGCAAGGCAAATATGAGTAGTGGCACGAAGTTCTGGTATGCCAACGTGTGTAGACCTGTATTACACAGGCAGACTGGGACGAACTCAGACGACAATCAATGGAAGAGGAATCGACAACATAGTTGGGCGCGGATGTGGCCAGTGGAACGTCTAACAAAGGTGTGCACAAAATTGAAGCAAATGCTGGGCAGGTCATGGATCCCCTTTCTTCCTTCAGTCCACAGTTCTTTGTCCTCAGTCGAATCCCCGTTCTCTCGTTTCTGTAGACTTCCCACAAACGCAGCGACGCCTACTGCAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCTGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCCTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGCTCTAGCTGCACTTAGGACGATGGGAATAGAAGAAGTGATGATGCACAGCGTCTAG 1350 49.19 MKLFSRGSECYGAAFHRAADNGRHTTIDQIMRKANMSSGTKFWYANVCRPVLHRQTGTNSDDNQWKRNRQHSWARMWPVERLTKVCTKLKQMLGRSWIPFLPSVHSSLSSVESPFSRFCRLPTNAATPTATTNFPKSSHSHNLLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSLDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRALAALRTMGIEEVMMHSV 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23828833 23839310 - CePI673135_08g011910.1 Cec08g1191 209833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1191 449 SMART GATA_3 391 441 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 ProSiteProfiles Tify domain profile. 262 297 IPR010399 -
Cec08g1191 449 ProSiteProfiles GATA-type zinc finger domain profile. 391 427 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515(InterPro)
Cec08g1191 449 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 391 431 - -
Cec08g1191 449 Pfam GATA zinc finger 397 432 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 MobiDBLite consensus disorder prediction 318 333 - -
Cec08g1191 449 MobiDBLite consensus disorder prediction 362 399 - -
Cec08g1191 449 PANTHER GATA TRANSCRIPTION FACTOR 28 241 435 IPR045280 GO:0006355(InterPro)
Cec08g1191 449 Pfam tify domain 265 296 IPR010399 -
Cec08g1191 449 CDD ZnF_GATA 396 431 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 Gene3D - 393 436 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec08g1191 449 SMART tify_2 262 297 IPR010399 -
Cec08g1191 449 MobiDBLite consensus disorder prediction 318 337 - -
Cec08g1191 449 ProSitePatterns GATA-type zinc finger domain. 397 424 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 Pfam CCT motif 329 371 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1191 Cec-Chr8:23828833 Cec09g1744 Cec-Chr9:32728035 1.40E-58 dispersed
Cec08g1190 Cec-Chr8:23812317 Cec08g1191 Cec-Chr8:23828833 3.00E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30075 PF06203 CCT 1.30E-14 CL0281 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1191 - - - 0.0