Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1191 ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGCGGCTGACAACGGGAGACATACGACAATTGACCAGATCATGCGCAAGGCAAATATGAGTAGTGGCACGAAGTTCTGGTATGCCAACGTGTGTAGACCTGTATTACACAGGCAGACTGGGACGAACTCAGACGACAATCAATGGAAGAGGAATCGACAACATAGTTGGGCGCGGATGTGGCCAGTGGAACGTCTAACAAAGGTGTGCACAAAATTGAAGCAAATGCTGGGCAGGTCATGGATCCCCTTTCTTCCTTCAGTCCACAGTTCTTTGTCCTCAGTCGAATCCCCGTTCTCTCGTTTCTGTAGACTTCCCACAAACGCAGCGACGCCTACTGCAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCTGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCCTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGCTCTAGCTGCACTTAGGACGATGGGAATAGAAGAAGTGATGATGCACAGCGTCTAG 1350 49.19 MKLFSRGSECYGAAFHRAADNGRHTTIDQIMRKANMSSGTKFWYANVCRPVLHRQTGTNSDDNQWKRNRQHSWARMWPVERLTKVCTKLKQMLGRSWIPFLPSVHSSLSSVESPFSRFCRLPTNAATPTATTNFPKSSHSHNLLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSLDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRALAALRTMGIEEVMMHSV 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23828833 23839310 - CePI673135_08g011910.1 Cec08g1191 209833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1191 449 SMART GATA_3 391 441 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 ProSiteProfiles Tify domain profile. 262 297 IPR010399 -
Cec08g1191 449 ProSiteProfiles GATA-type zinc finger domain profile. 391 427 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515(InterPro)
Cec08g1191 449 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 391 431 - -
Cec08g1191 449 Pfam GATA zinc finger 397 432 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 MobiDBLite consensus disorder prediction 318 333 - -
Cec08g1191 449 MobiDBLite consensus disorder prediction 362 399 - -
Cec08g1191 449 PANTHER GATA TRANSCRIPTION FACTOR 28 241 435 IPR045280 GO:0006355(InterPro)
Cec08g1191 449 Pfam tify domain 265 296 IPR010399 -
Cec08g1191 449 CDD ZnF_GATA 396 431 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 Gene3D - 393 436 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec08g1191 449 SMART tify_2 262 297 IPR010399 -
Cec08g1191 449 MobiDBLite consensus disorder prediction 318 337 - -
Cec08g1191 449 ProSitePatterns GATA-type zinc finger domain. 397 424 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1191 449 Pfam CCT motif 329 371 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1191 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1191 Cec-Chr8:23828833 Cec09g1744 Cec-Chr9:32728035 1.40E-58 dispersed
Cec08g1190 Cec-Chr8:23812317 Cec08g1191 Cec-Chr8:23828833 3.00E-39 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g0164 . 1 229 Tify Gene Family AT3G21175 56.8 5.2e-59 224.6
Cec08g1191 . 238 431 Tify Gene Family AT4G24470 61.8 1.2e-59 227.3
Cec09g1744 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cec09g0164 . 1 287 Tify Gene Family AT1G51600 59.7 7.4e-88 320.9
Cec09g1744 . 86 269 Tify Gene Family AT1G51600 60.9 5.0e-52 201.8
Cec08g1191 . 232 431 Tify Gene Family AT1G51600 52.5 5.0e-44 175.3
Cec08g1191 . 238 431 Tify Gene Family AT4G24470 61.8 1.2e-59 227.3
Cec09g1744 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cec09g0164 . 1 287 Tify Gene Family AT1G51600 59.7 7.4e-88 320.9
Cec09g1744 . 86 269 Tify Gene Family AT1G51600 60.9 5.0e-52 201.8
Cec08g1191 . 232 431 Tify Gene Family AT1G51600 52.5 5.0e-44 175.3
Cec09g0164 . 1 229 Tify Gene Family AT3G21175 56.8 5.2e-59 224.6
Cec06g0653 . 1 180 Tify Gene Family AT4G14713 53.1 1.0e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30075 PF06203 CCT 1.30E-14 CL0281 Cec TF