Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1201 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGTGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCAATCTAGTAACCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGCTTGAAAATGAAAATAGCAATCACATCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACGCGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGATGACAGCTCCGACACTTCCCTCAAATTAGGCAATGCAACAAGCAAAGGCGTGAGGGAGCATCCAGCTGCTCATTGGTTCCATTTTGAGCAACCCAAGTGGGCCAAAAGCTTTGACACAAATCTGTGTTTGGTAAAACTCTGGCTTCCCCTCCCTGTTCATCGGAGCTTGCGCTGTGCTCTGATTTACGAATGTCAACACACTGAGTTCCTTTTGACTCGTTTTCAACTCACCGATCTTCCCTTCATCCCTCTCTTCGCCATGAAGAACGCCCCCGTCAGAGGCCTTGAAGTTTTCGATTTCACCGAAGAAGACGAACTTCCTGAATTAATCTCCGAGAAGCGCCTCAGCAAATTTAAAAACCCTAATCTCGAATCTAACGCTGTTTTGAAGTATGAATTTCTCGAATGTGGGAAGGAGATTGAAAATCCACACATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATAATCCTTCGGGGACAACTAAAGAGCAAGAAATCATGGAAGAAGAGAAATATCAATTGGATGCCAACGCAAAATCAGAATTGAAATGCCATTTGCAAGATATGCTCGTGCAAGTAGATAATCATGTGACACAAAGCCTTTGCTCTCAACTTGGGAAAATTGGATCTAGCTCTCAAAGTCCTACCCAGGGGTTAACTTGCACTCTTCCTGAGTTTACTGCTGAAAGGGAGCAAGTTGATACACTTTCAGATCCTAATGGAAGCATAAAAGGGAGTTCTCCAGTGAGCCCTCCTTCAGAAACTGTAGAGGATGGTGTTTTGTTGAACGGGAAGACTTCAGATAATTGCTCATCTGACAATGAAAAGGATGATCTTAGTGACGAGGTTGTCCTTTATCCCGATTATATTGTATGTGGAGATTTTTACTGTGCCAGTCCCTCCTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTGCTGATTATGGAAGCAATGAGTACCTTAACCTTGAATGGAGAGTCGACGATGTCATTCATATTGAGTGCCAGTGCTTTCAAAGGGTTGAATATGTGATGATCAAGCTCCATGTTATCTCAAAGGATGCTGGTGAATGTGACAATGCGTGTGACAGTTCTGGCATTAAGGAAGTGAAGATTGTTCTTGTTGATTCTTACTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGATGTGGGAATAGGATCCGATGATGATGATTTAGGTGGGCAGAGACACTATTTTCCCAACTTTGATGAGCCTTTTGAAGAAGTTGTCTATCCCGAAGGAGATCCAGATGCTGTTTCCATTAGTAAGAGGGATGTTGACTTGCTGCAACCAGAGACGTTTGTCAATGACACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGATCCCAAGGAGAAGCATAGATTTCACTTCTTCAATAGTTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCAGATGGCAGAGCTGCCTTTCTACGTGTTCGGAAATGGACACGGAAAGTGGATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAATCTTCATTGGAGCTTAATGGTCATATGCCACCCTGGCGAAGTGGCTAGATATAGTGATGAAGACCTGATGAAGTCAATGAAAGTACCGTGTATATTGCATATGGATTCTATTAAAGGAAGTCACGCAGGTCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAAAGAGAGAAACAAGGAGACACCTGAAGATATTTCAACAAAATTTAAGAACCTTCGGTTCCTCCCACTTGAGCTTCCACAGCAGGAAAATTCATTTGATTGCGGATTGTTCTTGCTCCACTATCTAGAACTTTTTCTGGCAGAAGCTCCTCTTGATTTTAGCCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCCTACCTCAAGCGAACTTTAATACAGAGATTAATTTTTGAAATCCTTGAGAACCGATCTCGAGAAATGTCCGCAGCTGCTTGCAGTGATGAACTCTTGTCTAAATTTCCATCCAATAATGAGGATGAAACTGGTCTGGAGCTTCTTCCCGAAAGAGGAAGCCCAGCCGTGGCACGCAATCACAATTTGCCAAGCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTATCTGAATCTTCCAGTAGACACAACCACTTCATTGACTGTTCTGGCTTGGTTGTCAGAGAATTATTTGAACCAGGTGCCTCTAATGGACCGTTACTTGGACACTATCAATCTTTTGGTCAAACATCATCGTATTTTGATTCAAATGGAACTGTGCTGGAGGAGGACGCAGATGCAGAAACTGGAGACCGTTTCATGTACTTACCTCCACAACAGGATGGTTTGCAGCCAATTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGTGTTCATCGAGAGGCCTTGAATCGGACCCTGCTTTTGACTTATGCATGTCTATTCAACAAGAGCACGGCGGGGGCATTGCCTCGTCCCCGACAGATGACTTGGAAGACGTGGGAATCATTGAACATTCCAATGTTAGGGAAGCAAGTCCTGGTAACACAGAAGAAAGGAACGGAAAAGGGCCTCTACCGATTGAGAAGGAGAACCTGGAACCTGTAGCAGAATGCCCTACTTCTGCTGCTACCACGAAGAAAGATTTTGATGCCATTGTCTTCTCTCAATATGACACTAACGAGGAAAATAACGATTCGAAGAATCCCATGTGTAAAGAGACTCTCGTTGCATTGCCACATCTAGATAAAGATATAACAACCAAAACAGACTTCGAACAAGATGATGTGCTGGTGGTTGCTTCGGTTACTGAGGTGGACTTAGACGAGCAACCCCCTGCCAAGAAACCAAGGCGTTCGTCATACCACGAAGAAGCGAGTAACAACGGTGTCAGAGAAGGTTTGTTGGATGATGCAGAGTTATAA 3687 43.29 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLQSSNLGKLEYPSLELQLENENSNHIRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGNATSKGVREHPAAHWFHFEQPKWAKSFDTNLCLVKLWLPLPVHRSLRCALIYECQHTEFLLTRFQLTDLPFIPLFAMKNAPVRGLEVFDFTEEDELPELISEKRLSKFKNPNLESNAVLKYEFLECGKEIENPHMDVDLDECNRGCDNGISHNPSGTTKEQEIMEEEKYQLDANAKSELKCHLQDMLVQVDNHVTQSLCSQLGKIGSSSQSPTQGLTCTLPEFTAEREQVDTLSDPNGSIKGSSPVSPPSETVEDGVLLNGKTSDNCSSDNEKDDLSDEVVLYPDYIVCGDFYCASPSLTFSHNGIKINGFADYGSNEYLNLEWRVDDVIHIECQCFQRVEYVMIKLHVISKDAGECDNACDSSGIKEVKIVLVDSYWSEKQQKIRSLDSRYMAIWNMSLDVGIGSDDDDLGGQRHYFPNFDEPFEEVVYPEGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGRAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDEDLMKSMKVPCILHMDSIKGSHAGLKNLIQSYLLEEWKERNKETPEDISTKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILENRSREMSAAACSDELLSKFPSNNEDETGLELLPERGSPAVARNHNLPSSQAVDGIEITLLSESSSRHNHFIDCSGLVVRELFEPGASNGPLLGHYQSFGQTSSYFDSNGTVLEEDADAETGDRFMYLPPQQDGLQPIDAMTSQACRFPCSSRGLESDPAFDLCMSIQQEHGGGIASSPTDDLEDVGIIEHSNVREASPGNTEERNGKGPLPIEKENLEPVAECPTSAATTKKDFDAIVFSQYDTNEENNDSKNPMCKETLVALPHLDKDITTKTDFEQDDVLVVASVTEVDLDEQPPAKKPRRSSYHEEASNNGVREGLLDDAEL 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23910284 23929154 - CePI673135_08g012010.1 Cec08g1201 209843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1201 1228 Gene3D - 703 834 - -
Cec08g1201 1228 MobiDBLite consensus disorder prediction 201 228 - -
Cec08g1201 1228 MobiDBLite consensus disorder prediction 455 475 - -
Cec08g1201 1228 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 306 1160 - -
Cec08g1201 1228 MobiDBLite consensus disorder prediction 201 227 - -
Cec08g1201 1228 FunFam Transcription factor, MADS-box 13 83 - -
Cec08g1201 1228 Pfam K-box region 88 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec08g1201 1228 MobiDBLite consensus disorder prediction 454 499 - -
Cec08g1201 1228 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 SUPERFAMILY Cysteine proteinases 655 900 IPR038765 -
Cec08g1201 1228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 MobiDBLite consensus disorder prediction 1196 1213 - -
Cec08g1201 1228 Coils Coil 88 115 - -
Cec08g1201 1228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 ProSiteProfiles Ubiquitin-like protease family profile. 663 857 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cec08g1201 1228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec08g1201 1228 MobiDBLite consensus disorder prediction 1195 1228 - -
Cec08g1201 1228 Pfam Ulp1 protease family, C-terminal catalytic domain 678 879 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cec08g1201 1228 FunFam Probable ubiquitin-like-specific protease 2B 703 834 - -
Cec08g1201 1228 Gene3D - 656 899 - -
Cec08g1201 1228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1201 1228 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec08g1201 1228 Coils Coil 151 178 - -
Cec08g1201 1228 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1081 Cec-Chr8:22650142 Cec08g1201 Cec-Chr8:23910284 3.20E-25 dispersed
Cec08g1201 Cec-Chr8:23910284 Cec10g0980 Cec-Chr10:22215785 7.00E-44 dispersed
Cec04g1146 Cec-Chr4:31070037 Cec08g1201 Cec-Chr8:23910284 3.70E-14 transposed
Cec05g2757 Cec-Chr5:38040910 Cec08g1201 Cec-Chr8:23910284 1.10E-34 transposed
Cec06g0514 Cec-Chr6:5748348 Cec08g1201 Cec-Chr8:23910284 1.20E-18 transposed
Cec09g1734 Cec-Chr9:32558132 Cec08g1201 Cec-Chr8:23910284 3.90E-124 transposed
Cec04g1519 Cec-Chr4:34709076 Cec08g1201 Cec-Chr8:23910284 6.00E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30077 PF02902 Peptidase_C48 1.10E-39 CL0125 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1201 K08596 - csv:101206097 1553.88