Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1221 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATAATGGACGGCTGAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATCTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGGACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCACGACGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCATATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGCAAATCAAGGATCACCAAGAACAAGAGTAAAAAACGTTGA 1341 42.73 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIGQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGHDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24123399 24128877 - CePI673135_08g012210.1 Cec08g1221 209863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1221 446 SUPERFAMILY Protein kinase-like (PK-like) 6 286 IPR011009 -
Cec08g1221 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Cec08g1221 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Cec08g1221 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Cec08g1221 446 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1221 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Cec08g1221 446 CDD CIPK_C 309 424 - -
Cec08g1221 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1221 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g1221 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Cec08g1221 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1221 446 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Cec08g1221 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Cec08g1221 446 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Cec08g1221 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0761 Cec-Chr3:8350328 Cec08g1221 Cec-Chr8:24123399 1.70E-147 dispersed
Cec05g1809 Cec-Chr5:29949201 Cec08g1221 Cec-Chr8:24123399 8.00E-107 dispersed
Cec06g0049 Cec-Chr6:457509 Cec08g1221 Cec-Chr8:24123399 4.70E-70 dispersed
Cec08g1221 Cec-Chr8:24123399 Cec10g1304 Cec-Chr10:27267368 6.80E-98 dispersed
Cec11g0241 Cec-Chr11:2572458 Cec08g1221 Cec-Chr8:24123399 2.80E-13 dispersed
Cec06g1289 Cec-Chr6:26120882 Cec08g1221 Cec-Chr8:24123399 9.90E-170 transposed
Cec04g1559 Cec-Chr4:35068524 Cec08g1221 Cec-Chr8:24123399 3.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72205 PF00069 Pkinase 1.30E-70 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1221 - - - 0.0