Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1223 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATGCAAATTGGGAAGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTCTAAATTTTCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATACCGCCATGGAAGTAGCAGCAGCAGCCACTGCGCCTCTGCCATTTCAACCAGTTCATCCGAATGTGGAGCGAGAAGAAGAGGAAGAGGAACTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGGCTTGTAAAATGGAGCCGAACCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGCCAACCATCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTAGAAGGATCAAATCCGAGGACGAATTCATTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGGAATTCACCAAAATTTGAAGTAGAAAACAGAAATGGAGACACGAGAATCGAGATTTGCTGTGCGGGAAAGCCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCTACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1014 44.87 MELDEHVFLEELMALRRDANWEAIPTEITDLCSNAWAFDYCFDQSTLNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYTAMEVAAAATAPLPFQPVHPNVEREEEEEELGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNPRTNSLKNTKPSEFVVRNSPKFEVENRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGSCL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24160848 24163148 + CePI673135_08g012230.1 Cec08g1223 209865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1223 337 Coils Coil 108 128 - -
Cec08g1223 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 130 332 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec08g1223 337 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
Cec08g1223 337 Pfam Helix-loop-helix DNA-binding domain 174 216 IPR011598 GO:0046983(InterPro)
Cec08g1223 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983(InterPro)
Cec08g1223 337 Gene3D - 156 231 IPR036638 GO:0046983(InterPro)
Cec08g1223 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
Cec08g1223 337 Coils Coil 206 226 - -
Cec08g1223 337 CDD ACT_UUR-ACR-like 262 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1223 Cec-Chr8:24160848 Cec11g1209 Cec-Chr11:25188406 1.60E-11 dispersed
Cec05g1432 Cec-Chr5:16729218 Cec08g1223 Cec-Chr8:24160848 4.90E-34 transposed
Cec03g0384 Cec-Chr3:4303182 Cec08g1223 Cec-Chr8:24160848 3.30E-33 transposed
Cec11g1540 Cec-Chr11:29671983 Cec08g1223 Cec-Chr8:24160848 4.90E-77 wgd
Cec04g1513 Cec-Chr4:34660382 Cec08g1223 Cec-Chr8:24160848 1.10E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30079 PF00010 HLH 6.20E-10 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1223 - - - 0.0