Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec08g1223 | ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATGCAAATTGGGAAGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTCTAAATTTTCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATACCGCCATGGAAGTAGCAGCAGCAGCCACTGCGCCTCTGCCATTTCAACCAGTTCATCCGAATGTGGAGCGAGAAGAAGAGGAAGAGGAACTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGGCTTGTAAAATGGAGCCGAACCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGCCAACCATCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTAGAAGGATCAAATCCGAGGACGAATTCATTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGGAATTCACCAAAATTTGAAGTAGAAAACAGAAATGGAGACACGAGAATCGAGATTTGCTGTGCGGGAAAGCCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCTACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG | 1014 | 44.87 | MELDEHVFLEELMALRRDANWEAIPTEITDLCSNAWAFDYCFDQSTLNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYTAMEVAAAATAPLPFQPVHPNVEREEEEEELGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNPRTNSLKNTKPSEFVVRNSPKFEVENRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGSCL | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24160848 | 24163148 | + | CePI673135_08g012230.1 | Cec08g1223 | 209865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec08g1223 | 337 | Coils | Coil | 108 | 128 | - | - | |
Cec08g1223 | 337 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 130 | 332 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Cec08g1223 | 337 | SMART | finulus | 173 | 222 | IPR011598 | GO:0046983(InterPro) | |
Cec08g1223 | 337 | Pfam | Helix-loop-helix DNA-binding domain | 174 | 216 | IPR011598 | GO:0046983(InterPro) | |
Cec08g1223 | 337 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 171 | 234 | IPR036638 | GO:0046983(InterPro) | |
Cec08g1223 | 337 | Gene3D | - | 156 | 231 | IPR036638 | GO:0046983(InterPro) | |
Cec08g1223 | 337 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 167 | 216 | IPR011598 | GO:0046983(InterPro) | |
Cec08g1223 | 337 | Coils | Coil | 206 | 226 | - | - | |
Cec08g1223 | 337 | CDD | ACT_UUR-ACR-like | 262 | 303 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec08g1223 | Cec-Chr8:24160848 | Cec11g1209 | Cec-Chr11:25188406 | 1.60E-11 | dispersed | |
Cec05g1432 | Cec-Chr5:16729218 | Cec08g1223 | Cec-Chr8:24160848 | 4.90E-34 | transposed | |
Cec03g0384 | Cec-Chr3:4303182 | Cec08g1223 | Cec-Chr8:24160848 | 3.30E-33 | transposed | |
Cec11g1540 | Cec-Chr11:29671983 | Cec08g1223 | Cec-Chr8:24160848 | 4.90E-77 | wgd | |
Cec04g1513 | Cec-Chr4:34660382 | Cec08g1223 | Cec-Chr8:24160848 | 1.10E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30079 | PF00010 | HLH | 6.20E-10 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec08g1223 | - | - | - | 0.0 |