Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1231 ATGGTGATGCCGGAGTCGTCTGAGGGCCACCGGACGGCGTCTCGTCGAGCGAATCGACCGCCGACTCGACCGCTTGTCGCACCTAGGGTTCCGCTGAGACGGTTACTCCGCGTCGCATCTATCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTCACTCCTTATATTCAAGAGCTTGGTATTCCTCACGCTTGGTCTAGTCTCATATGGCTCTGCGGACCGCTTTCCGGCCTCTTTGTCCAACCACTTGTTGGTCATATGAGCGATCACTGCACCAGCCGGTACGGCCGCCGGAGGCCGTTCATCGTCGTTGGAGCGCTTTCCATAGTACTCGCCGTTTTGATTATTGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGGTTGGTTTTTGGATTCTCGACGTTGCTAACAACGTCTCCCAGGGTCCGTGTAGAGCTCTGCTTGCTGATCTTACCGGAAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATCGCTATTGGTAATGTTTTTGGATATGCGACTGGATCTTTTAGTGGCTGGTACAAGATCTTCCCGTTTACTCTTACCTCTGCATGTTCTATTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATATTGTGTTCATTGCAATTACAACATATTTGAGTGTATCAGCAGCTCAAGAGTTGCCTCTAGTTTCAAGCGACAGGTCCTCCCTGGTTTTAGAAGAAGGTATGGGGCAGTCAAGTCATGCTTCAGAAGCATTTCTCTGGGACTTGTTACGGACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGATAGCATGGTTCCCATTTATTCTCTTTGATACTGATTGGATGGGTAGAGAGATCTATGGTGGCAAGCCAAATGAAGGACAGGCTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTGTAACTCTGTTGTCCTCGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGGTGGTTTCATATGGGGAATCTCTAATATTTTTATGGGTCTATGTTTTCTTACTATCCTGGTTGTTACGTATGTGGCAAACAATATGGGCTATATAGGTCATGATCTCCCACCAAATAGTATTGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGCCCCTTTGGCAATTACTTACAGTGTTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTACAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTAAACTTAGCAATAGTTTTCCCACAGATTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAACTCTCCAGCTTTTGCTTGCTCAGAACCCCAGAAACCTCACATGAGAATATTTGAAAAGCTTGGTTGGTGTGCATCTCATCCATGA 1503 46.37 MVMPESSEGHRTASRRANRPPTRPLVAPRVPLRRLLRVASIACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDHCTSRYGRRRPFIVVGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVVGFWILDVANNVSQGPCRALLADLTGKDHRRNRVANAYFSLFIAIGNVFGYATGSFSGWYKIFPFTLTSACSINCANLKSAFLIDIVFIAITTYLSVSAAQELPLVSSDRSSLVLEEGMGQSSHASEAFLWDLLRTFRHFSGYIWVILLVTSLTWIAWFPFILFDTDWMGREIYGGKPNEGQAYSSGVRMGAFGLMCNSVVLGITSLLMEKLCRKWGGGFIWGISNIFMGLCFLTILVVTYVANNMGYIGHDLPPNSIVSAALIIFALLGAPLAITYSVPYAMISSRVESLQLGQGLSAGVLNLAIVFPQIVVSLGSGPWDQLFGGGNSPAFACSEPQKPHMRIFEKLGWCASHP 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24260491 24265595 - CePI673135_08g012310.1 Cec08g1231 209873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1231 500 FunFam Sucrose transport protein 29 483 - -
Cec08g1231 500 Gene3D MFS general substrate transporter like domains 32 480 IPR036259 -
Cec08g1231 500 SUPERFAMILY MFS general substrate transporter 33 470 IPR036259 -
Cec08g1231 500 CDD MFS_SLC45_SUC 35 478 - -
Cec08g1231 500 PANTHER SUGAR TRANSPORTER 27 465 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cec08g1231 500 Pfam MFS/sugar transport protein 47 448 - -
Cec08g1231 500 MobiDBLite consensus disorder prediction 1 25 - -
Cec08g1231 500 NCBIfam sucrose/proton symporter 30 479 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1231 K15378 - - csv:101220384 896.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1231 Cec-Chr8:24260491 Cec11g1097 Cec-Chr11:21653634 3.90E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec11g1104 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.1 1.3e-169 593.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.4 3.3e-128 455.7
Cec11g1097 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec11g1104 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 6.7e-174 607.4
Cec08g1231 . 32 477 Sucrose Transporter Gene Family AT1G22710 51.3 5.7e-133 471.5
Cec09g2296 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 1.2e-182 636.3
Cec08g1231 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 8.1e-196 680.2
Cec11g1097 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1104 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.3e-132 470.3
Cec11g1097 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1104 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.2e-164 575.9
Cec11g1097 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec11g1104 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.6 2.8e-169 592.0
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.4 5.3e-128 454.9
Cec11g1097 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec11g1104 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 9.3e-143 503.8
Cec08g1231 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 4.2e-111 398.7
Cec11g1097 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec11g1104 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.6 3.9e-171 598.2
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT2G14670 52.1 2.0e-130 463.0
Cec11g1097 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec11g1104 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.1 3.7e-161 565.1
Cec08g1231 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.7 7.2e-125 444.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30