Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1233 ATGGCTTTCCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCTTCTCTTCTTCTCAAGCTCTTACTACTTCCGCTACTAACAACCAATCTCAGTTCTTTTATCTCATGCAAAAGACTGCCTCAGGAGAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCTTTCTGCAGCTTCACTGGAATCCGGTGCAATGACCGAGGTTACGTTGTCGAGATTGATATCACTGGCCAGTCACTCTCTGGTAGCTTTCCGGAAGATGTATGTTCTTACTTGCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACCAGTTTCTACGGACGTTTTCCTTCAGGAATCACCAACTGCTCTCTCATTGAAGAACTTAACATGAGCTCTTTGTATCTCATTGGAACTATCCCAGATTTATCGCAAATGAAACAACTGCGTGTACTCGACCTCTCATACAATTTCTTTACCGGTGATTTTCCCATGTCGGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCCTGACGAAGCTGAAATCTATGGTGTTGACAACCTGTATGTTAGATGGTGAAATCCCCCGATTGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAGAGAAATCTCCTTGCTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGCTTGGAAATTTAACAGAGCTTGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTTCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCGCCTGTCCGGGCCATTGCCATTGGACATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTGCAAAATAGGCTTTCTGGAGAAATACCAGCAAGTTTTGCTGAATGCATATCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGATAGGAACAATTCCTGAAGGAGTTTTGGGTCTCCCCCATGTTTCAATTATTGATGTTGCTCATAATAATCTCACTGGTTCCATTTCAAATTCTATCTCACAGGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGACCTCAGCAACAATCTTCTCTCGGGTCCAGTGCCATCGCAGATTGGCAATCTGATGAAACTAAATCAGGTGATGTTACAAGGAAACCAATTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAATCTCTCAATGTTCTTGATCTCTCGAACAACCGTTTATCCGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTATCGGGTCCAATTCCTTTGTCTTTGATCAAACAAGGATTAGCAGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCTGATCAGAAATTCCCCATTTGTTCACATTTCTCCTTTAAAAAACGTCTAAATTTCATCTGGGGAATCGTTATTCCATTGCTCATCTTCTTCACCGGCGCCGTCCTGTTTCTAAAACGACGAATCACAACAAGAAAAACATCAGAGATCGAAAACGAACAAACCCTCTCCTCTTCATTCTTCCATTTGCAGAGCTTCGATCAAAGCAGGATTCTCGAAGCGATGGTGGAAAAGAACATTGTGGGACACGGTGGATCAGGAACAGTCTACAAAATTGAGCTCGAAAATGGAGAAATCGTCGCCGTGAAGAGGCTATGGAATCGAAGAGCGAAACATCTCTTCGACAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATAAGACACAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAATTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAATTTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCACAAGGTCTCGCTTATCTCCACCACGATCTCTCGCCGCCGGTAATCCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTACCAACCCAAAGTTGCAGATAGTATCGCCAAAGTTCTACAAGGAACTAAAGATTCAACCAACTCTGTAATCGCAGGGACATACGGCTATCTAGCCCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTATAGCTTTGGAGTAGTGTTGATGGAGTTGATAACAGGGAAAAAGCCGATTGAAACAGAGTACGGTGAAAACAAGAACATAGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAGGGGTTCTTGAGATTCTTGACAAGAAACTAAAAGGGTTGTTCAGGGATGATATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCACTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTTGAAAAAGGAGAAGATACGTACATGATGTCACTAAAATAA 2820 42.48 MAFHSAFFLLLFFTTFSFSSSQALTTSATNNQSQFFYLMQKTASGEFLSDWDLSGGKSFCSFTGIRCNDRGYVVEIDITGQSLSGSFPEDVCSYLPELRVLRLAGTSFYGRFPSGITNCSLIEELNMSSLYLIGTIPDLSQMKQLRVLDLSYNFFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISSLTKLKSMVLTTCMLDGEIPRLIGNMTSLVDLELSGNFLKGEIPREISLLKNLQQLELYYNELTGNIPEELGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLQNRLSGEIPASFAECISLLRFRISFNQLIGTIPEGVLGLPHVSIIDVAHNNLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHFSFKKRLNFIWGIVIPLLIFFTGAVLFLKRRITTRKTSEIENEQTLSSSFFHLQSFDQSRILEAMVEKNIVGHGGSGTVYKIELENGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADSIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDKKLKGLFRDDIIKALRIAIRCTYKNPLLRPAMGEVVQLLQEVDPCKFDRPFEKGEDTYMMSLK 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24279053 24281964 + CePI673135_08g012330.1 Cec08g1233 209875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1233 939 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 342 917 IPR051716 -
Cec08g1233 939 SMART serkin_6 647 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1233 939 FunFam Leucine-rich repeat receptor-like protein kinase 182 284 - -
Cec08g1233 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g1233 939 SUPERFAMILY L domain-like 257 573 - -
Cec08g1233 939 ProSiteProfiles Protein kinase domain profile. 647 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1233 939 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 Pfam Leucine Rich Repeat 434 455 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 Pfam Leucine Rich Repeat 144 163 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 Pfam Leucine Rich Repeat 506 528 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 FunFam Receptor protein-tyrosine kinase CEPR1 288 574 - -
Cec08g1233 939 FunFam Leucine-rich repeat receptor-like protein kinase 725 930 - -
Cec08g1233 939 SUPERFAMILY L domain-like 67 355 - -
Cec08g1233 939 Gene3D Ribonuclease Inhibitor 34 180 IPR032675 -
Cec08g1233 939 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524(InterPro)
Cec08g1233 939 FunFam receptor protein-tyrosine kinase CEPR1 630 724 - -
Cec08g1233 939 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Cec08g1233 939 SUPERFAMILY Protein kinase-like (PK-like) 625 915 IPR011009 -
Cec08g1233 939 PRINTS Leucine-rich repeat signature 504 517 - -
Cec08g1233 939 PRINTS Leucine-rich repeat signature 459 472 - -
Cec08g1233 939 Pfam Protein kinase domain 649 910 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1233 939 Gene3D Ribonuclease Inhibitor 181 282 IPR032675 -
Cec08g1233 939 SMART LRR_typ_2 288 312 IPR003591 -
Cec08g1233 939 SMART LRR_typ_2 433 456 IPR003591 -
Cec08g1233 939 SMART LRR_typ_2 240 264 IPR003591 -
Cec08g1233 939 SMART LRR_typ_2 504 528 IPR003591 -
Cec08g1233 939 SMART LRR_typ_2 166 192 IPR003591 -
Cec08g1233 939 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515(InterPro)
Cec08g1233 939 Gene3D Transferase(Phosphotransferase) domain 1 725 927 - -
Cec08g1233 939 Gene3D Ribonuclease Inhibitor 283 575 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0897 Cec-Chr8:20768069 Cec08g1233 Cec-Chr8:24279053 5.50E-76 dispersed
Cec08g1233 Cec-Chr8:24279053 Cec11g1548 Cec-Chr11:29777168 5.10E-180 dispersed
Cec11g1547 Cec-Chr11:29759261 Cec08g1233 Cec-Chr8:24279053 8.50E-85 wgd
Cec04g1495 Cec-Chr4:34461918 Cec08g1233 Cec-Chr8:24279053 1.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72206 PF00069 Pkinase 3.90E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1233 - - - 0.0