Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1245 ATGGACTCAAACCTTTTGCAACGTCAAGTTGCCTACACGAAGAGGTGCTTTTTTGAGCAGGGTTATCTTGATTGTGATCAATTCACTCAGCTTGAAGAACTGCAAGATGATGCTAACCCGAATTTTGCTGAAGAAATTGTGTCTTTATTCTACAATGATTCAGCCAGACTCATACGGAGCATTGAACAAACCATGGTCAGTAAGCCAACGGATTTTGAAAAGCTTGACAACTACATGCACCAGTTCAAGGGCAGTAGCTCAAGCATTGGAGCCAATAGGGTGACTGATGCATGCTCACAGTTTAGAGAATACTGCTTGGCAGGCAATCTTGAAGGATGCACAAGGAGTTTCCAGGAAGTGAAACAGGAGCATGAAATTCTGAAGAAGAAGCTTGATACTTATTTCCAGACAATGTCGCACGAGCAAGACAGTGTGTCGTCCTATTCGTTGACCTCAGGCACCAAGCACAAGACACAACTTGGGCAGCCTCAGTCAAGGAGACAATCTCCTCCACCAAATAGCTCAACTTTGACAAATCACAATCCTTATGATCAGTGGAATTTGGTAATACAATCAAAGGGAAAAAAGCATAGTCACTAA 600 42.83 MDSNLLQRQVAYTKRCFFEQGYLDCDQFTQLEELQDDANPNFAEEIVSLFYNDSARLIRSIEQTMVSKPTDFEKLDNYMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEGCTRSFQEVKQEHEILKKKLDTYFQTMSHEQDSVSSYSLTSGTKHKTQLGQPQSRRQSPPPNSSTLTNHNPYDQWNLVIQSKGKKHSH 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24392025 24395902 - CePI673135_08g012450.1 Cec08g1245 209887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1245 199 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 39 148 IPR008207 GO:0000160(InterPro)
Cec08g1245 199 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 6 139 IPR045871 GO:0000160(PANTHER)|GO:0000160(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009736(PANTHER)|GO:0009927(InterPro)|GO:0009927(PANTHER)|GO:0016310(PANTHER)|GO:0043424(PANTHER)|GO:0043424(InterPro)
Cec08g1245 199 Pfam Hpt domain 45 127 IPR008207 GO:0000160(InterPro)
Cec08g1245 199 Gene3D HPT domain 1 151 IPR036641 GO:0000160(InterPro)
Cec08g1245 199 MobiDBLite consensus disorder prediction 145 185 - -
Cec08g1245 199 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 19 138 IPR036641 GO:0000160(InterPro)
Cec08g1245 199 FunFam Histidine-containing phosphotransfer protein 1 1 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1245 K14490 - - csv:101219195 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0561 Cec-Chr6:6221455 Cec08g1245 Cec-Chr8:24392025 3.40E-28 dispersed
Cec08g1245 Cec-Chr8:24392025 Cec09g0017 Cec-Chr9:159218 3.50E-38 dispersed
Cec08g1245 Cec-Chr8:24392025 Cec07g1447 Cec-Chr7:30082335 1.30E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75