Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1249 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAACTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACGTTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1056 53.5 MEAPEYFQINGYCSQFATHSSSDNDSATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPETTTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQRLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24434599 24436387 - CePI673135_08g012490.1 Cec08g1249 209891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1249 351 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Cec08g1249 351 SMART GATA_3 235 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 Gene3D - 234 285 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec08g1249 351 MobiDBLite consensus disorder prediction 181 206 - -
Cec08g1249 351 MobiDBLite consensus disorder prediction 174 239 - -
Cec08g1249 351 Pfam GATA zinc finger 241 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 PANTHER GATA TRANSCRIPTION FACTOR 36 307 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cec08g1249 351 PIRSF Txn_fac_GATA_plant 15 330 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cec08g1249 351 Coils Coil 299 319 - -
Cec08g1249 351 CDD ZnF_GATA 240 287 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 FunFam GATA transcription factor 233 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1249 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1249 Cec-Chr8:24434599 Cec09g0008 Cec-Chr9:80815 3.50E-65 dispersed
Cec11g1570 Cec-Chr11:29992165 Cec08g1249 Cec-Chr8:24434599 2.60E-76 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1249 . 85 351 C2C2-Gata Transcription Factor Family AT5G25830 54.0 7.9e-67 251.1
Cec07g1441 . 96 287 C2C2-Gata Transcription Factor Family AT3G60530 50.5 6.2e-45 177.9
Cec04g1704 . 111 287 C2C2-Gata Transcription Factor Family AT4G36240 50.3 1.8e-41 166.4
Cec10g0229 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.9 1.6e-138 490.0
Cec09g1299 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 4.7e-135 478.4
Cec10g0229 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 3.9e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30081 PF00320 GATA 1.80E-15 CL0167 Cec TF