Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1249 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAACTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCATCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACGTTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1056 53.5 MEAPEYFQINGYCSQFATHSSSDNDSATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPETTTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQRLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24434599 24436387 - CePI673135_08g012490.1 Cec08g1249 209891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1249 351 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Cec08g1249 351 SMART GATA_3 235 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 Gene3D - 234 285 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec08g1249 351 MobiDBLite consensus disorder prediction 181 206 - -
Cec08g1249 351 MobiDBLite consensus disorder prediction 174 239 - -
Cec08g1249 351 Pfam GATA zinc finger 241 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 PANTHER GATA TRANSCRIPTION FACTOR 36 307 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cec08g1249 351 PIRSF Txn_fac_GATA_plant 15 330 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cec08g1249 351 Coils Coil 299 319 - -
Cec08g1249 351 CDD ZnF_GATA 240 287 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1249 351 FunFam GATA transcription factor 233 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1249 Cec-Chr8:24434599 Cec09g0008 Cec-Chr9:80815 3.50E-65 dispersed
Cec11g1570 Cec-Chr11:29992165 Cec08g1249 Cec-Chr8:24434599 2.60E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30081 PF00320 GATA 1.80E-15 CL0167 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1249 - - - 0.0