Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec08g1260 | ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCGAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA | 666 | 44.29 | MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY | 221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 24584472 | 24585137 | - | CePI673135_08g012600.1 | Cec08g1260 | 209902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec08g1260 | 221 | FunFam | Ethylene-responsive transcription factor 2 | 40 | 99 | - | - | |
| Cec08g1260 | 221 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Cec08g1260 | 221 | SUPERFAMILY | DNA-binding domain | 41 | 99 | IPR016177 | GO:0003677(InterPro) | |
| Cec08g1260 | 221 | SMART | rav1_2 | 41 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | CDD | AP2 | 42 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | Pfam | AP2 domain | 40 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 20 | 160 | IPR051032 | - | |
| Cec08g1260 | 221 | Gene3D | AP2/ERF domain | 41 | 100 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | PRINTS | Ethylene responsive element binding protein signature | 64 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cec08g1260 | 221 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec08g1260 | Cec-Chr8:24584472 | Cec09g0183 | Cec-Chr9:1640324 | 5.00E-41 | dispersed | |
| Cec06g0252 | Cec-Chr6:2742331 | Cec08g1260 | Cec-Chr8:24584472 | 1.60E-32 | transposed | |
| Cec11g1573 | Cec-Chr11:30021244 | Cec08g1260 | Cec-Chr8:24584472 | 9.70E-58 | wgd | |
| Cec04g1588 | Cec-Chr4:35308096 | Cec08g1260 | Cec-Chr8:24584472 | 2.50E-16 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30082 | PF00847 | AP2 | 5.30E-14 | CL0081 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec08g1260 | K09286 | - | csv:101206242 | 340.117 |