Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1260 ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCGAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA 666 44.29 MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 221
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 24584472 24585137 - CePI673135_08g012600.1 Cec08g1260 209902
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1260 221 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Cec08g1260 221 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 MobiDBLite consensus disorder prediction 1 43 - -
Cec08g1260 221 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677(InterPro)
Cec08g1260 221 SMART rav1_2 41 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 CDD AP2 42 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 Pfam AP2 domain 40 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 IPR051032 -
Cec08g1260 221 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1260 221 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1260 Cec-Chr8:24584472 Cec09g0183 Cec-Chr9:1640324 5.00E-41 dispersed
Cec06g0252 Cec-Chr6:2742331 Cec08g1260 Cec-Chr8:24584472 1.60E-32 transposed
Cec11g1573 Cec-Chr11:30021244 Cec08g1260 Cec-Chr8:24584472 9.70E-58 wgd
Cec04g1588 Cec-Chr4:35308096 Cec08g1260 Cec-Chr8:24584472 2.50E-16 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30082 PF00847 AP2 5.30E-14 CL0081 Cec TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1260 K09286 - csv:101206242 340.117