Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1290 ATGGACTCCGGCGAATCAAACCTCCCTCTCCTCCTCCAACACTCATACTGCAGATCCAAATCCCTAACCTCCGACGACCTTCGCGACTTCCGAATCAGCCTCAAATGGTGCGCTCTCGACCACTCCTCCCCCGCCGGAAAGTTCTTCTCCTACTTCACCTTCGCTTTCCTGACCTTCGTCGTCCCCGCCGTCACGATCGTCGCCATCCGAGATCCAGCCGACGATCCGATCTCGTTCAATAAACTGGTTCAGGTTCCGGAATCCGGACTGGCGGCGGTCGGATTCTTGAGCCTATGCCGATTCTTCCGGCGGTATGGACTCCGGCAGCTTCTGTTCTTGGAGGGATTGCAAGATGATTCTGTGTATGTGCAGAAAGGGTATGCGCGTGAACTGGAGAAGTGGTTCCGTTACGTTGCTTACATTCTTTTTCCGTCGTTCTTTGTTGAGTTGGCCCACAAGATCATATTTTTCTCCACCGTCAAGATTTCATTTCCGGTAGGGTTTCCAATGAACTCGATTGTGTTCGTATTGGTGTTGGGATCGTGGGTATACCGAACCGGGGTGTTCTTGCTCGTGTGCGTATTGTTTCGGCTCACATGCGAGTTGCAAATTCTTAGGCTACAAGGGGTTCACAAGCTGTTCGAAACAAGCAGCGGGTCGGGATCGGATGTGGTGGTGATCTTCAACGAACATTTGAGGATCAGAAAACAATTATCAGTGACGAGCCACCGATACCGGTTCTTCATAATTGTGTGCTTGCTCGTTATTACGGTTAGCCAGTTCGTTGCGTTGCTTTTGGTTTTGGCTTCTAAAAGTGACAAAAATTTCTTCAACTCCGGCGATGTTGTGGTTTGCTCGGCTGTTCAATTATGCGGATTCTTCTTGTGCTTGTTTGGAGCTGCGAGAATTACTCACCGAGCACAAGCAATTGCATCGGTTGCAACCCGATGGCACATGCTAGTCACCTCCGCCGCCGCCGGATCCAACCCAACCAAATCTCCACCGCTACAGCCGCCTGTTGACGACAAGAAAGACGGTAATGGTAGTGTTGCCGACGACGACGACACCGATTCGGATTCGTCATCGGACGTTTTAATTTCAATGAGCACACAACAACCTTCTTCCTTCCAAACCAGACAAGCTTTAGTGTCATATTTGCAACACAACAATGGGGGAATTACACTGTTTGGATATGCATTAGATCGAGGATTACTTCATACACTCTTCGCATTTGAATTCTCTCTCGTCATGTGGATTCTGATTTCCGTTTCGTCTCTCTCTCCTTCTCTCTCAATCGGATCAGAGGAATTCTTCCGGTTTTATTCGTCGGAATTCTTGATTTGTACAATCATGGTTCTTTGGGTTTTTGGCTATGGATCTCTTGTGTGGAATCCAGGATTCGACTTCGATGAGAAAGTGATAGGTTTCATTAGAGATTATAGGCGTGTATTTGATCTTGCTTGTATTGACCATAGAGGTACACCTGAAAATCCTGCTAGAACTCTCACGCTAGAACCCAAAGAAGGATCAATTTGCTGGGGTGCTGCATTTTGCATCCGTGGAGGTCCTGAAAGAGAGAGAGAGGCCATGGAGTATTTGGAGAGGAGAGAGTGCGAGTATGATCAAAAGACTATTATGAACTTCTACGAGGATGAAGACTCCTTGGAACCCACATTGACAGGAGTAGTAGTTTTCACATCTACATTTGATAAAGTGCTAAACAAATACTATCTAGGACCTGCTCCATTGGAGCAAATGGCTAGCCAAATTGCAACTGCATCTGGTCCATGTGGGAACAATAGAGACTATCTATTCCGGTTAGAGAAGGCCTTGTTCGATATCGGCCACGAAGACGATATGGTGATCGAGCTTGCTAATGAAGTGAGGAATATCCTTGGGAAGGTTGGGAAGGGGGTGATTTTGAAGGAGAAGAAGAATCCGATTGGACCGATGACCCACCTGCCATTCATGTCCTTCATCTCAGGTGTTCAGGTGCATCCGCTGGCAGAAGCCGCCGCTGTGGCCATGGATTCTTAA 2037 47.77 MDSGESNLPLLLQHSYCRSKSLTSDDLRDFRISLKWCALDHSSPAGKFFSYFTFAFLTFVVPAVTIVAIRDPADDPISFNKLVQVPESGLAAVGFLSLCRFFRRYGLRQLLFLEGLQDDSVYVQKGYARELEKWFRYVAYILFPSFFVELAHKIIFFSTVKISFPVGFPMNSIVFVLVLGSWVYRTGVFLLVCVLFRLTCELQILRLQGVHKLFETSSGSGSDVVVIFNEHLRIRKQLSVTSHRYRFFIIVCLLVITVSQFVALLLVLASKSDKNFFNSGDVVVCSAVQLCGFFLCLFGAARITHRAQAIASVATRWHMLVTSAAAGSNPTKSPPLQPPVDDKKDGNGSVADDDDTDSDSSSDVLISMSTQQPSSFQTRQALVSYLQHNNGGITLFGYALDRGLLHTLFAFEFSLVMWILISVSSLSPSLSIGSEEFFRFYSSEFLICTIMVLWVFGYGSLVWNPGFDFDEKVIGFIRDYRRVFDLACIDHRGTPENPARTLTLEPKEGSICWGAAFCIRGGPEREREAMEYLERRECEYDQKTIMNFYEDEDSLEPTLTGVVVFTSTFDKVLNKYYLGPAPLEQMASQIATASGPCGNNRDYLFRLEKALFDIGHEDDMVIELANEVRNILGKVGKGVILKEKKNPIGPMTHLPFMSFISGVQVHPLAEAAAVAMDS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24879870 24890262 - CePI673135_08g012900.1 Cec08g1290 209932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1290 678 Gene3D - 452 615 - -
Cec08g1290 678 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 8 421 IPR021924 -
Cec08g1290 678 MobiDBLite consensus disorder prediction 325 363 - -
Cec08g1290 678 FunFam Gamma-glutamylcyclotransferase 452 635 - -
Cec08g1290 678 CDD GGCT_like 455 545 IPR013024 -
Cec08g1290 678 Pfam Protein of unknown function (DUF3537) 25 411 IPR021924 -
Cec08g1290 678 Pfam ChaC-like protein 453 630 IPR006840 GO:0006751(InterPro)|GO:0061928(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2869 Cec-Chr5:38875020 Cec08g1290 Cec-Chr8:24879870 4.90E-95 dispersed
Cec08g0583 Cec-Chr8:17264401 Cec08g1290 Cec-Chr8:24879870 4.50E-51 dispersed
Cec08g1290 Cec-Chr8:24879870 Cec09g1083 Cec-Chr9:10640753 3.30E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g243 . . . . . . . . . . . . . . Sed03g1519 . . Bhi04g01112 Tan02g2600 Cmetu03g0813 . Hepe10g0329 . Lcy13g1703 . . . . . . . . . . . . . . Cme03g01709 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01253 Cam08g1710 Cec08g1290 Cco08g1411 Clacu08g1407 . Cre08g1192 Lsi08g01115 Csa02g02306 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011850 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30