Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1322 ATGTGGGCAATTTCTACAGAGAGAAACAAAGAGAGAAGAGTGCTTCACAAGTTTCACACTTCGCCACAGCAATACCCCATTCTCCATTTGACCGACTTTTGTGTTCAGAAGAACGCCATTACTGAAGTTTCAAACCTCTTCCAAGACATTTCAGAAACCCTGAAAAGAAGCTATGGTTTTGCAGGGGTTGGATCTTTGGAGTGGCGAATCGAAACAATGCTGAGGAAGAGAACAAGGTCAGTTCAGAAAGATCAATACAAAATGAATCAGATGAATGTCCCTTGTTCTGGTTCTGAGCTCCACCCCAAATGTAGCTCTATTTTCAAAAGATCTCACTTGTTTACTGGGTTGTCTCCTAAAGGTTTAGATTCTGATTCAGCCAAAAGTCCAACTTCCCCTCTGGATTTTTGGGTTTTATCAAGTTTAGGTAACACTCTTAGATCTCCTAGGTCATCATCCAATGAGGGGCATAGAAGGAACTGGGATTCTAGTAAAGTAGGGCTGAGCATTATAGATTCTTTAAATGATGATGATAGTAAACTATTTGGAAAAGTTCTTCGATCGTCGGATAGTAAGACTGCTCTCTGTGGACCTCGAAGTGTGGCCAAGAAATCGAATTGTCCATCACAGGCAAATCTTATCCAGGGGACTAAGTCCTTGCCTAAAAACTATGCAATGGTACCAAAGACCAAAACTTCCATTGAAGGGGGAAACTCTGATGTAATTTTTGAAATTGGAGAAACCCCATTAGAATGTGAGCCTTTTGGAAACTACTCTCGTTCTTTTGATTCCTACAGGGCGTTTGCACCCCGATCTGGTTTAACTGGTCACAGCCTCAGTAGTAGTACTGCTACTGAGGGCGTTGCTTCTCCCCGGTTAGCTGAAGAGCCTCGAGTGTCAGAAAAATGTCTGTTCACAAAACCGTGTTTGATTTCTTTAGGCATATCCTGTGACAATGGATCTAAGAGGCCTCTCTCAGCAAGTGAGATTGAGCTGTCTGAGGATTATACATGTGTAATTTCGCATGGTCCGAACCCGAAAACTACTCATATTTATGGTGACTGCATTTTAGAATGTCACTCTAATTCTTTGAGCTCTTCTTCCGAGAATGAAATGAAGGAGATGAGCTTTCCTCATCCTCTTAAAAGCTTGAATATCTCCACTTCATATTCCTTAACTGACTTTTTAAGCTTCTGCTACTCCTGTCACAAGAAACTGGAAGAGGGAAAAGACATCTACATTTACAGGGGGGAGAAAGCCTTCTGTAGTCTAACATGCCGTTCTCAGGAGATATTGATGGACGAAGAACTCGAGAAATCCATTGACAAAACCTCCGAAAGTTCTCCCAAGTCCAGTGCTGACCATGATGAGGACCTTTTCGAAACCAGCATTGGTGGCTTTGCTTAA 1407 42.15 MWAISTERNKERRVLHKFHTSPQQYPILHLTDFCVQKNAITEVSNLFQDISETLKRSYGFAGVGSLEWRIETMLRKRTRSVQKDQYKMNQMNVPCSGSELHPKCSSIFKRSHLFTGLSPKGLDSDSAKSPTSPLDFWVLSSLGNTLRSPRSSSNEGHRRNWDSSKVGLSIIDSLNDDDSKLFGKVLRSSDSKTALCGPRSVAKKSNCPSQANLIQGTKSLPKNYAMVPKTKTSIEGGNSDVIFEIGETPLECEPFGNYSRSFDSYRAFAPRSGLTGHSLSSSTATEGVASPRLAEEPRVSEKCLFTKPCLISLGISCDNGSKRPLSASEIELSEDYTCVISHGPNPKTTHIYGDCILECHSNSLSSSSENEMKEMSFPHPLKSLNISTSYSLTDFLSFCYSCHKKLEEGKDIYIYRGEKAFCSLTCRSQEILMDEELEKSIDKTSESSPKSSADHDEDLFETSIGGFA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25174168 25176698 + CePI673135_08g013220.1 Cec08g1322 209964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1322 468 ProSiteProfiles Zinc finger FLZ-type profile. 394 438 IPR007650 -
Cec08g1322 468 MobiDBLite consensus disorder prediction 437 461 - -
Cec08g1322 468 MobiDBLite consensus disorder prediction 437 468 - -
Cec08g1322 468 PANTHER FCS-LIKE ZINC FINGER 11 73 465 IPR044585 -
Cec08g1322 468 Pfam zinc-finger of the FCS-type, C2-C2 391 436 IPR007650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1322 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0636 Cec-Chr6:7117655 Cec08g1322 Cec-Chr8:25174168 2.90E-33 dispersed
Cec08g1322 Cec-Chr8:25174168 Cec09g0690 Cec-Chr9:6095118 1.20E-17 dispersed
Cec03g1548 Cec-Chr3:33640667 Cec08g1322 Cec-Chr8:25174168 2.10E-13 transposed
Cec11g1179 Cec-Chr11:24173599 Cec08g1322 Cec-Chr8:25174168 5.10E-12 transposed
Cec05g1903 Cec-Chr5:31080054 Cec08g1322 Cec-Chr8:25174168 3.10E-75 wgd
Cec07g1418 Cec-Chr7:29780589 Cec08g1322 Cec-Chr8:25174168 1.00E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g390 . . Bda01g00719 . . . . Bma01g02147 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1741 . . . . Chy04g00329 Cme03g01673 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01282 Cam08g1740 Cec08g1322 Cco08g1443 Clacu08g1437 . Cre08g1224 Lsi08g01145 . . Cme04g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007053 2 1 0 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37