Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1324 ATGGAATTTGAAGATTCGATCTTACATCTCTATTTTCTCTTTGACGCTCGAGGGATTTGGATCTCGCGTCTGTGGAGAGCGTTGAAGATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTACTGTGGCTCTACAGTCTGAATTTAATAAAAGGGCTTCCAAGATTGGGTTAGCGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCAGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAGTATCTAAACAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCGTGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAACGCATCGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAAGAGCACTCTTTATCGGTCTCCAGAAGGATGGAATGCCTTAAATGATAGATGTAAAGAAAGAATCCATATCAAGAGCATCGCATTAGGAATTTGGAAGTGGATATTTTAA 1269 42.16 MEFEDSILHLYFLFDARGIWISRLWRALKMAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSTVALQSEFNKRASKIGLAIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRRKIWILVKYNVDNVSVRVYAFNFSSNFGNASLKNSNASNYYSLKSTLYRSPEGWNALNDRCKERIHIKSIALGIWKWIF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25189970 25197288 + CePI673135_08g013240.1 Cec08g1324 209966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1324 422 PANTHER SYNTAXIN 83 349 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec08g1324 422 MobiDBLite consensus disorder prediction 197 256 - -
Cec08g1324 422 SUPERFAMILY t-snare proteins 81 328 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cec08g1324 422 ProSitePatterns Syntaxin / epimorphin family signature. 279 318 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec08g1324 422 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 273 335 IPR000727 -
Cec08g1324 422 Pfam SNARE domain 309 350 IPR000727 -
Cec08g1324 422 Gene3D - 79 328 - -
Cec08g1324 422 MobiDBLite consensus disorder prediction 54 75 - -
Cec08g1324 422 CDD SNARE_syntaxin5 276 351 - -
Cec08g1324 422 MobiDBLite consensus disorder prediction 199 219 - -
Cec08g1324 422 SMART tSNARE_6 268 335 IPR000727 -
Cec08g1324 422 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 35 54 IPR021538 -
Cec08g1324 422 MobiDBLite consensus disorder prediction 238 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0462 Cec-Chr7:4816654 Cec08g1324 Cec-Chr8:25189970 1.30E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1324 K08490 - csv:101203633 523.472