Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1327 ATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAAAATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAGTTCAAATGGCTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACCCGAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATCCTCTTCAATCCAGCCAGAATTCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCCGCATCCTGCCCCATCTGCTAGAGGCAGTCAAGGGTCAGGAGAACTATCAGCAAGATTAAAAGTATTGGTGGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACATCAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGGGATGATAGAGAAAACAACTCCGGGGCTGGTGATGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAACGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCACACTTTTTCCACAAGGACTGTGTAGATAAATGGTTGAAGATCAATGCCTTGTGCCCGCTTTGCAAAACCGAGGCGGCATTCATTAGAGCCTTGAACAAGCTCCTTGTAGCAAATCCATCGGTTGTCAATATAGGCAGGGTTATATGGTACGTGCTGGACATTTTGAACGTGGAGAGATCGTTATGCTGGACTGCTCGTTTCTGA 1350 43.85 MDVPSVELNCESEGDSYPLLMARPENSNSSEHIIDITGTGDSAPSSLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDPLQSSQNSSRINVPAGPFSLSVSRASEGEELPHPAPSARGSQGSGELSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGDGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEAAFIRALNKLLVANPSVVNIGRVIWYVLDILNVERSLCWTARF 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25207714 25211119 - CePI673135_08g013270.1 Cec08g1327 209969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1327 449 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Cec08g1327 449 SUPERFAMILY RING/U-box 355 410 - -
Cec08g1327 449 FunFam E3 ubiquitin-protein ligase 346 411 - -
Cec08g1327 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 410 IPR013083 -
Cec08g1327 449 MobiDBLite consensus disorder prediction 1 96 - -
Cec08g1327 449 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cec08g1327 449 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 407 - -
Cec08g1327 449 Pfam Ring finger domain 363 404 IPR001841 -
Cec08g1327 449 SMART ring_2 363 403 IPR001841 -
Cec08g1327 449 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1327 Cec-Chr8:25207714 Cec09g2247 Cec-Chr9:39341623 8.00E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1327 - - - 0.0