Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1348 ATGAGCAACATTATTGTCCCTTTACCTTCTAACCTTCTCCCAGACGCAGCAAATCCAGAATGGATGAGCAAAGGCGACAACGCATGGCAGTTAACGGCGGCGACACTAGTGGGACTACAGAGCGTGCCGGGTCTAATAATCCTGTACGGCGGAGCAGTTAAGAAGAAATGGGCCATAAACTCAGCGTTCATGGCTCTGTACGCGTTCGCTTGCGTGTTGGTTTGTTGGGTGGGGTGGGGCTACCGGCTGTCGTTTGGGGATAAATTGGCGCCGTTTTGGGGGAAATTGAATGTGGCTTTGGACCAGGAGTTTCTGCTGGCGCCAGCCTTTGCTGGGAAGTTTCCTTCGGCCACAATGGTTTTCTTTCAATTTGTATTTGCGGCCATTACTTTGGTTTTGATCGCTGGGGCTTTACTTGGACGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCGCTTTGGTTAACGTTTTCGTATACGTTTGTGGCCTTTAGTATTTGGAGTCCTAATGGCTTTTTCTTTAAAATGGGACTTATTGATTACTCTGGTGGTTACGTCATTCATTTGTCTTCTGGTGTTGCTGGCTTCACCGCTGCTTATTGGGTTGGGCCACGGCTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTGATGCTGGCCGGAGCAGGGTTGCTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCGGCTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCGGCGATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTTCTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTTCTACGGCGCCTACAACAAATACATTGGCCTTTTCTACGGCTTCAACACAAAACAAGTTAAACTCGGCTTTCGCCAACTCGGCGTTCAACTCCTCGGAATCATCTTCGTCACTCTCATAAACGTCATTGTCACTAGCCTTATCTGTGTCCTCCTCCAATATATCGTCCCGCTCCGAATGTCCGAGGAGGACATGGCTATCGGGGACGAGGCCGCCCATGGCGAAGAGGCCTACGCCATTTGGGGCCAGGGTGAGAAGATGGATTCTTCTAAATACGATATTGAGATTCCTGTGTCAACCAAACATAGGCATTCAGGCCAGATTGAAATGGCCTAA 1428 51.68 MSNIIVPLPSNLLPDAANPEWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKLNVALDQEFLLAPAFAGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAALNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVFYGAYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEIPVSTKHRHSGQIEMA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25397209 25400958 + CePI673135_08g013480.1 Cec08g1348 209990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1348 475 PANTHER AMMONIUM TRANSPORTER MEP2 17 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cec08g1348 475 FunFam Ammonium transporter 11 445 - -
Cec08g1348 475 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec08g1348 475 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec08g1348 475 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Cec08g1348 475 NCBIfam ammonium transporter 26 442 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cec08g1348 475 SUPERFAMILY Ammonium transporter 21 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1774 Cec-Chr4:36667342 Cec08g1348 Cec-Chr8:25397209 8.40E-163 dispersed
Cec08g1348 Cec-Chr8:25397209 Cec10g2236 Cec-Chr10:36705218 8.70E-152 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1348 K03320 - csv:101210590 904.434