Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1356 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTATCTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCATCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAATATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTGCTACATCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAAAGGAAGAAAAGCTCAGTCAACAACAATAGCGATGATTCAAAACGTTGCTGCAATTGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTGTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAATGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGATAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTGGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTGATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATGTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTATACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGGTAACGAAAATGAGGTTGGGATGAATAATTCTTTGGGAGGGTTGAAGAGCCATAGATATATATTGAAGTCCATGCCTCTCCCACCCCTCACCCCACGCAACAAATGA 1917 42.04 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKDPCSIYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAHLNSFPSNFTSNVKAISYDPEFSVLNLDAASNNRVSANSSRSCTLLHPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNNSDDSKRCCNCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESVHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLIDDHNATALSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDMFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGYTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYGNENEVGMNNSLGGLKSHRYILKSMPLPPLTPRNK 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25493608 25498895 - CePI673135_08g013560.1 Cec08g1356 209998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1356 638 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 139 636 IPR044522 GO:0003700(InterPro)
Cec08g1356 638 MobiDBLite consensus disorder prediction 286 321 - -
Cec08g1356 638 MobiDBLite consensus disorder prediction 286 300 - -
Cec08g1356 638 SMART CXC_2 407 448 IPR033467 -
Cec08g1356 638 SMART CXC_2 320 361 IPR033467 -
Cec08g1356 638 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 409 445 IPR005172 -
Cec08g1356 638 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 323 358 IPR005172 -
Cec08g1356 638 ProSiteProfiles CRC domain profile. 321 447 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0581 Cec-Chr5:4751961 Cec08g1356 Cec-Chr8:25493608 1.00E-40 dispersed
Cec06g0948 Cec-Chr6:13038286 Cec08g1356 Cec-Chr8:25493608 4.90E-27 dispersed
Cec08g1356 Cec-Chr8:25493608 Cec11g0247 Cec-Chr11:2634808 2.40E-27 dispersed
Cec08g1356 Cec-Chr8:25493608 Cec06g0642 Cec-Chr6:7160585 6.90E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30089 PF03638 TCR 1.40E-10 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1356 K21776 - cit:102611790 274.633