Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1365 ATGGCTCTTCAACACAATAAGCCAACAACAACGGCTCTCTTCTTCTTCTTCTTATTCTTCTTCAAACACATTTTCATGGCTCTTGCAGACATTGGCACTGCCACAGCCTATGGCCCCCCATATCTTCCCACTGCGTGTAACGGGAATAGTGCCGACCAGTTCCCTCCCGGCAACCTTTTTGTAGCGGTGAACGAAGGGTTGTGGGATAACGGTGCTGCCTGCGGTCGGCGATACAGATTACGATGTTTGAGCGGCCGAAATCGGCCGTGCAAGACCGACATCATCGAAGTTCAAGTCGTGAACTTTTGCCCTAAGTTTCCATGCCCCTCTTCCTTTCTCATGTCCAAAGAGGCCTTCTCTGCCATCTCTCGCTTCCCCAATGCTAAACTCAACGTCGAATATATTGAGATATAA 414 49.28 MALQHNKPTTTALFFFFLFFFKHIFMALADIGTATAYGPPYLPTACNGNSADQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNRPCKTDIIEVQVVNFCPKFPCPSSFLMSKEAFSAISRFPNAKLNVEYIEI 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25572012 25572666 + CePI673135_08g013650.1 Cec08g1365 210007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1365 137 CDD DPBB_EG45-like 30 134 - -
Cec08g1365 137 SUPERFAMILY Barwin-like endoglucanases 17 134 IPR036908 -
Cec08g1365 137 Gene3D - 30 137 IPR036908 -
Cec08g1365 137 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 8 135 - -
Cec08g1365 137 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 137 IPR007112 -
Cec08g1365 137 SMART dpbb_1 61 134 IPR007112 -
Cec08g1365 137 Pfam Lytic transglycolase 62 134 IPR009009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1365 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1320 Cec-Chr7:28737106 Cec08g1365 Cec-Chr8:25572012 5.20E-19 dispersed
Cec08g1365 Cec-Chr8:25572012 Cec11g0287 Cec-Chr11:3111994 4.50E-16 dispersed
Cec08g1365 Cec-Chr8:25572012 Cec08g1345 Cec-Chr8:25384443 2.70E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g462 Blo01g01381 . Bda01g00739 Bda03g00066 . . . . Cmo05g00387 . . Cma05g00388 . . Sed01g1369 . . Bhi04g00975 Tan02g2713 Cmetu03g1797 . Hepe10g0261 . Lcy13g1780 . . . . . . . . . . . . . . Cme03g01622 . . . . . . . . . . . . . . Car05g00329 Cpe11g00332 . . . . . . . . Cla08g01325 Cam08g1787 Cec08g1365 Cco08g1493 Clacu08g1481 . Cre08g1270 . . Chy03g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36