Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1370 ATGGGAGAAACAAGGGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCTGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGAAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTCGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCGATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCCGAGCAGATTGATACATCCACTTACATTGCAGTTGATTTTGAATGTGCCATCATAGATGTAGGGATCTTCAGCATAGAATATCGGCTACCCAGCCTCTGTAATTCGGGTATACTCAAATCAAAGAGCTGGGATTGGGATTGGAAGCATCGAAGAAAAGGAGAAAGAAGAGGAAGAGAGAGTTTGGCGGAGAAGATGAAGATGAAGGAAGAAAGAGAGGATGGGAGGGGAAAGATGGAGTAA 1488 43.41 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYIAVDFECAIIDVGIFSIEYRLPSLCNSGILKSKSWDWDWKHRRKGERRGRESLAEKMKMKEEREDGRGKME 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25606474 25612711 - CePI673135_08g013700.1 Cec08g1370 210012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1370 495 Gene3D - 259 427 IPR027417 -
Cec08g1370 495 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Cec08g1370 495 SMART helicmild6 302 383 IPR001650 -
Cec08g1370 495 Gene3D - 42 258 IPR027417 -
Cec08g1370 495 MobiDBLite consensus disorder prediction 1 29 - -
Cec08g1370 495 CDD DEADc_DDX39 45 252 - -
Cec08g1370 495 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Cec08g1370 495 SMART ultradead3 65 266 IPR014001 -
Cec08g1370 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cec08g1370 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cec08g1370 495 MobiDBLite consensus disorder prediction 467 495 - -
Cec08g1370 495 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Cec08g1370 495 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec08g1370 495 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cec08g1370 495 CDD SF2_C_DEAD 263 392 - -
Cec08g1370 495 MobiDBLite consensus disorder prediction 1 22 - -
Cec08g1370 495 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Cec08g1370 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1370 Cec-Chr8:25606474 Cec09g0077 Cec-Chr9:628920 3.90E-62 dispersed
Cec08g1370 Cec-Chr8:25606474 Cec07g1507 Cec-Chr7:30669075 7.90E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1370 K12812 - csv:101217346 831.632