Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1397 ATGGGTGATCCGAGAGAGAAAGACACGTTGCGTGTCGCAGTGGCAGAGATAAAAGGATTCCTCCCAATCTCCGCCCTTACAAAGAAAGAGGGAACCGAACAGCCGTTTTACAATTGGCAGTTTACCGAGCTGTTTTCTTCATCTGAAAACCGCCTTCCCTCTCCATTGCTTTCACTCCTTCCTAATCTCTTCCCTCACCATGGCTCTATAATCTTTGACTTAAAATTTGCTTCTTTACCGGCGGCGACTTTTATGGCTTTTCGTAACCAACTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATCACACTCTGCCCTCGATTCTATCTGATCAGCTCGCCGACCACTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCCCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGGGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTTGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCATTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGATTGGAAGCATTGAAATTGGAAATCATCGTCTGCTTTGGGGTTCATCAGCAAGGTTGA 1677 48.42 MGDPREKDTLRVAVAEIKGFLPISALTKKEGTEQPFYNWQFTELFSSSENRLPSPLLSLLPNLFPHHGSIIFDLKFASLPAATFMAFRNQLSRDLPLHYANQPQQQQPERPLSDHTLPSILSDQLADHSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHPSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRLEALKLEIIVCFGVHQQG 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25771491 25778848 - CePI673135_08g013970.1 Cec08g1397 210039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1397 558 Pfam KNOX2 domain 336 385 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec08g1397 558 SMART ELK_2 443 464 IPR005539 GO:0003677(InterPro)
Cec08g1397 558 SMART HOX_1 465 530 IPR001356 GO:0003677(InterPro)
Cec08g1397 558 Pfam KNOX1 domain 277 317 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec08g1397 558 Pfam Homeobox KN domain 483 522 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec08g1397 558 CDD homeodomain 466 527 IPR001356 GO:0003677(InterPro)
Cec08g1397 558 SMART KNOX2_2 331 386 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec08g1397 558 MobiDBLite consensus disorder prediction 231 246 - -
Cec08g1397 558 MobiDBLite consensus disorder prediction 122 144 - -
Cec08g1397 558 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 267 525 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec08g1397 558 FunFam homeobox protein knotted-1-like 3 isoform X1 464 525 - -
Cec08g1397 558 ProSiteProfiles ELK domain profile. 443 463 IPR005539 GO:0003677(InterPro)
Cec08g1397 558 MobiDBLite consensus disorder prediction 231 266 - -
Cec08g1397 558 Pfam ELK domain 443 464 IPR005539 GO:0003677(InterPro)
Cec08g1397 558 SUPERFAMILY Homeodomain-like 465 529 IPR009057 -
Cec08g1397 558 ProSiteProfiles 'Homeobox' domain profile. 463 526 IPR001356 GO:0003677(InterPro)
Cec08g1397 558 Gene3D - 462 536 - -
Cec08g1397 558 SMART KNOX1_2 275 319 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0315 Cec-Chr1:3219474 Cec08g1397 Cec-Chr8:25771491 7.30E-104 dispersed
Cec08g1397 Cec-Chr8:25771491 Cec08g1742 Cec-Chr8:28552386 6.90E-23 dispersed
Cec05g1832 Cec-Chr5:30339214 Cec08g1397 Cec-Chr8:25771491 2.70E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30092 PF03791 KNOX2 4.10E-19 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1397 - - - 0.0