Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec08g1401 | ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATCCGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACCAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTCGCATCCGGCATTGCTCCGGTCCAGCGAGTGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGATGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA | 543 | 51.38 | MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDFSVASGIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRSASVVQPQPI | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25827623 | 25828256 | + | CePI673135_08g014010.1 | Cec08g1401 | 210043 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec08g1401 | 180 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Cec08g1401 | 180 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec08g1401 | 180 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec08g1401 | 180 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec08g1401 | 180 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec08g1401 | 180 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 119 | IPR050913 | - | |
Cec08g1401 | 180 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec08g1401 | 180 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec08g1401 | 180 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Cec08g1401 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec07g1388 | Cec-Chr7:29477260 | Cec08g1401 | Cec-Chr8:25827623 | 7.70E-27 | dispersed | |
Cec08g1401 | Cec-Chr8:25827623 | Cec09g0321 | Cec-Chr9:2668535 | 3.10E-41 | dispersed | |
Cec08g1401 | Cec-Chr8:25827623 | Cec08g1402 | Cec-Chr8:25834895 | 2.10E-53 | tandem | |
Cec05g1825 | Cec-Chr5:30231732 | Cec08g1401 | Cec-Chr8:25827623 | 2.40E-52 | wgd | |
Cec07g1362 | Cec-Chr7:29226929 | Cec08g1401 | Cec-Chr8:25827623 | 1.40E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30093 | PF00847 | AP2 | 1.90E-11 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec08g1401 | - | - | - | 0.0 |