Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1401 ATGCCTAGACCACAACAGAGATTTCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATCCGCCATCCCTTATTGAAAACTAGAATTTGGCTTGGTACTTTTGAGACGGCAGAAGACGCAGCACGAGCATACGATGAAGCCGCGCGCCTTATGTGTGGACCGAGAGCACGTACCAACTTCCCTTACGATGCCTCTCTCTCTCGCTCCTCGTCTTCACGCCTTCTCTCAGCTACTCTAACGGCTAAGCTCCACCGTTGCTACATGGCGTCTTTGCAGCTAACTAAGCAATCCTCCTCTGCTGCATGTCGCCCTCAAAATGACTTTTCCGTCGCATCCGGCATTGCTCCGGTCCAGCGAGTGGAAGCGGATACAACGACGGCGAAGAAAGTAAAACTGGAGAGCGTGGATTGTGGGGAGCCGTTGATGATTGAAATGTTGGACGATGATCATATACAACAAATGATTGAGGAGCTGCTTGATTACGGTGGAATTGAGCTTCGTTCTGCTTCTGTTGTGCAGCCTCAACCCATTTGA 543 51.38 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAACRPQNDFSVASGIAPVQRVEADTTTAKKVKLESVDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRSASVVQPQPI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25827623 25828256 + CePI673135_08g014010.1 Cec08g1401 210043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1401 180 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cec08g1401 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1401 180 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1401 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1401 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1401 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 119 IPR050913 -
Cec08g1401 180 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1401 180 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1401 180 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cec08g1401 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1388 Cec-Chr7:29477260 Cec08g1401 Cec-Chr8:25827623 7.70E-27 dispersed
Cec08g1401 Cec-Chr8:25827623 Cec09g0321 Cec-Chr9:2668535 3.10E-41 dispersed
Cec08g1401 Cec-Chr8:25827623 Cec08g1402 Cec-Chr8:25834895 2.10E-53 tandem
Cec05g1825 Cec-Chr5:30231732 Cec08g1401 Cec-Chr8:25827623 2.40E-52 wgd
Cec07g1362 Cec-Chr7:29226929 Cec08g1401 Cec-Chr8:25827623 1.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30093 PF00847 AP2 1.90E-11 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1401 - - - 0.0