Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1402 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAGCTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGCGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACAGCGCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTACCACCGTCTCCGGCGTTTTGA 495 48.89 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25834895 25835482 + CePI673135_08g014020.1 Cec08g1402 210044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1402 164 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cec08g1402 164 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1402 164 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1402 164 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Cec08g1402 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1402 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1402 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 107 IPR050913 -
Cec08g1402 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1402 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1402 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1825 Cec-Chr5:30231732 Cec08g1402 Cec-Chr8:25834895 4.00E-52 dispersed
Cec06g1284 Cec-Chr6:26016939 Cec08g1402 Cec-Chr8:25834895 6.30E-25 dispersed
Cec07g1362 Cec-Chr7:29226929 Cec08g1402 Cec-Chr8:25834895 1.40E-38 dispersed
Cec08g1402 Cec-Chr8:25834895 Cec09g0321 Cec-Chr9:2668535 7.20E-45 dispersed
Cec08g1401 Cec-Chr8:25827623 Cec08g1402 Cec-Chr8:25834895 2.10E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30094 PF00847 AP2 9.50E-12 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1402 - - - 0.0