Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1413 ATGTCGGACGAAGAGCATCATTTTGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAAAATGGCTACATTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACATCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATCTTCACCTCCAAAAAACTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTCCCTGAGGTTACTCGTACCGACTATCAGCTTATTGACATATCTGAAGATGGATTTTTTACGACATTGTGTTGGATTTACTTCGATGCGATGATTGGCCTTACTGAAATCTGGCTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGGAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAACTAA 495 45.05 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFFTTLCWIYFDAMIGLTEIWLPTDESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25985268 25987117 + CePI673135_08g014130.1 Cec08g1413 210055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1413 164 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cec08g1413 164 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Cec08g1413 164 FunFam Eukaryotic translation initiation factor 5A 86 162 - -
Cec08g1413 164 NCBIfam translation initiation factor IF-5A 18 156 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cec08g1413 164 SMART eIF_5a_2 85 158 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cec08g1413 164 Gene3D - 1 85 IPR014722 -
Cec08g1413 164 MobiDBLite consensus disorder prediction 1 20 - -
Cec08g1413 164 Gene3D - 86 163 IPR012340 -
Cec08g1413 164 PIRSF Transl_init_eIF5A 1 161 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cec08g1413 164 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 161 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cec08g1413 164 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 158 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cec08g1413 164 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Cec08g1413 164 SUPERFAMILY Nucleic acid-binding proteins 86 160 IPR012340 -
Cec08g1413 164 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1424 Cec-Chr6:27782933 Cec08g1413 Cec-Chr8:25985268 9.70E-71 dispersed
Cec05g1805 Cec-Chr5:29892958 Cec08g1413 Cec-Chr8:25985268 1.80E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1413 K03263 - csv:101211156 285.419