Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1474 ATGAAATTGCTCTTGGCCGTTACCATCAGCATCAGCATCAGCATCAGCAGCACTGGTTTTTCTGATAATTTCTCTTACAAGAACGCTCTCGACTTCTTCTCGATTTTCTGTTTGAAATACGGGACTTTGGAGAATAGTAGAAGTTTGAGATGGGGAACACAATGGGAGGGTGACCCAAATGAAATGCCGCAGAAGTCTCGTTCTGGTGTGATACTATTGCCCTCACCTCCGTCTAAGACAGGAAGCAATAAGGTTGCACCAATGAACGCACAAGCAGGGGCTCGTGGGAGGGCAGTTGATTTATGGAAAACAATTGGGACTAGTGTGTCAAATTTGCATATGAACAGTAGGGTTTTTATAGGCATGGCTTCTAATGGTAGGGAGATTTCTATATTGGCTTTTGAAGTAGCAAACACAATAAGCAAAGTAGCAAATTTGTCACAATCTCTCTCAGAAGAAAACATCCAGCACCTTAAAAAGGAACTATTACAATCAGAAGGGATAAAACAGTTGATCTCAACCAGTTTAGAGGAATTGCTAAGCATTGCAGCTGCTGACAAAAGGCAGGAATTTGACGTTGTCTCTCGGGAGGTAACACGATTTGGAAAGCAGTGCAAGGATTCACAGTGGCATAATCTGGATCAGTACTTTTCAAGACTAGATTTGAATGATTCAAGTCAAAAGCAAGCTCTAGAAGCCAAAGCAGCCTTGCGGGAACTCACCGTTTTAGCTCAGTATACTTCTGAATTATACCACGAATTACAAGCATTGGAAAGATTTGAGCAAGATTATAGACGGAAACTTGACGAAGTGGAGTTCTTGAACCAAGCAGGAATAGGAGAAAGTCTCTCAATCTTCCAAGGAGAATTGAATGTACAAAGAAAGCTTGTAAGGAGTTTCCAAAGCAAGTGCCTATGGTCCAGAAATCTAGATGAGATTGTGGAAAAGCTGGTCACTGTTTTAACATGGATAAATCAAACAATCGTCAAAACATTTGGTGACGACAACACAGATATAACATTGCTTACCAAGGACAGAAGTAATGGCCAGACACTGGGCGCTGTTGGTCTTGCCTTGCATTATGCAAACATAATCAGCCATATAAACCTCATTGCCTGTCGTCCAACCTCCATTCCTTCAAACATGAGGGATGCATTATACCGGGCATTGCCTGCAAGTGTTAAAATAGCTCTGCGCTCTCGATTGCGGGCTATGGATGCCAGTGAGGAGCCAGCTTATCTTGACGTCAACGCTAAAATGTATAAGATCCTTCAATGGATTGTTCCAATTGCTGCAAACACGACCAAAGCGCATCAAGCTTGTGGCCGAATTGGAGAATGGGCAACCCAAAGTAAGGAACACAGCAAAGGCAGAGCTACACAAAGCAACAATCCAATCCGCCTTCAAACGCTGTACCATGCAGACAAAGTAAAAACAGAGCAACAAATCCTTGAATTGGTCATATTGCTTCACCATCTCATCCATTTAGCAAAACAGCAACAACGACGCTCCACATCTCTCCGTTGCCGATCTCCAACTCCCAAGGACATGGCAAAGAATGCTCGTCGGATACAATTCAAGAGCCAAATCATCAAAGCCAACAAGGATGGGGTTCCCGCCGACAACAGACCATCGGCCGGCCAATCTCCGATCAGAAAGAGGGATCTCAGTAACAACAAAGGTATGGAAACTTACAAAAGTGAGAATAAAGGAATTTGGACTTTAAGCAAAGCGGTTTCAGTTTCAACCTTGAGTTCTCTTGGTAGAGTCTAG 1773 43.15 MKLLLAVTISISISISSTGFSDNFSYKNALDFFSIFCLKYGTLENSRSLRWGTQWEGDPNEMPQKSRSGVILLPSPPSKTGSNKVAPMNAQAGARGRAVDLWKTIGTSVSNLHMNSRVFIGMASNGREISILAFEVANTISKVANLSQSLSEENIQHLKKELLQSEGIKQLISTSLEELLSIAAADKRQEFDVVSREVTRFGKQCKDSQWHNLDQYFSRLDLNDSSQKQALEAKAALRELTVLAQYTSELYHELQALERFEQDYRRKLDEVEFLNQAGIGESLSIFQGELNVQRKLVRSFQSKCLWSRNLDEIVEKLVTVLTWINQTIVKTFGDDNTDITLLTKDRSNGQTLGAVGLALHYANIISHINLIACRPTSIPSNMRDALYRALPASVKIALRSRLRAMDASEEPAYLDVNAKMYKILQWIVPIAANTTKAHQACGRIGEWATQSKEHSKGRATQSNNPIRLQTLYHADKVKTEQQILELVILLHHLIHLAKQQQRRSTSLRCRSPTPKDMAKNARRIQFKSQIIKANKDGVPADNRPSAGQSPIRKRDLSNNKGMETYKSENKGIWTLSKAVSVSTLSSLGRV 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26482237 26486577 - CePI673135_08g014740.1 Cec08g1474 210116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1474 590 Coils Coil 257 277 - -
Cec08g1474 590 PANTHER OS01G0873900 PROTEIN 80 572 IPR045021 GO:0045927(InterPro)
Cec08g1474 590 MobiDBLite consensus disorder prediction 533 563 - -
Cec08g1474 590 Pfam Protein of unknown function (DUF668) 351 436 IPR007700 GO:0045927(InterPro)
Cec08g1474 590 Pfam Domain of unknown function (DUF3475) 131 187 IPR021864 GO:0045927(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1474 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1474 Cec-Chr8:26482237 Cec09g1026 Cec-Chr9:9946144 1.20E-102 dispersed
Cec08g1474 Cec-Chr8:26482237 Cec06g0694 Cec-Chr6:7873327 4.10E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1123 Blo01g01602 . Bda01g00479 Bda03g00293 Bpe02g00621 Bpe04g00249 . Bma01g02372 Cmo05g00313 Cmo12g00356 . . . Car12g00382 Sed11g1091 . Cpe07g00361 Bhi04g00143 Tan02g2080 Cmetu03g0952 . Hepe10g0159 . Lcy13g1908 Cla08g01418 Cam08g1897 Cec08g1474 Cco08g1607 Clacu08g1589 . Cre08g1373 Cone4ag1976 Cone7ag1894 Cone17ag1409 Cone20ag0074 . . . Cme03g01874 . Blo18g00778 . . Bpe02g01728 Bpe05g00141 Bma01g00884 Bma05g00166 . . . Cma12g00405 Cma05g00311 Car05g00258 . Cpe11g00259 . . . . . . . . . . . . . . . Lsi08g01313 Csa02g02139 Chy03g01380 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003603 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 3 1 1 47