Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1486 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTTACTCTCACCGTCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGATTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCGAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCATTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTCGACGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATTCTAACATATATACCAACAATACTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTACCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAAAAAAATTACCTCCGAAGGAATTCCTCACATGA 1224 42.16 MSNAVEDLILRHRHSDFRFQLLRSYSHRRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDDSEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYADERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNSNIYTNNTSPFQEFHGMQRILPLHNNIDDDYWFQSNSQKKLPPKEFLT 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26572878 26576990 + CePI673135_08g014860.1 Cec08g1486 210128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1486 407 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec08g1486 407 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Cec08g1486 407 MobiDBLite consensus disorder prediction 55 69 - -
Cec08g1486 407 MobiDBLite consensus disorder prediction 99 123 - -
Cec08g1486 407 PANTHER TRANSCRIPTION FACTOR E2F 102 361 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cec08g1486 407 FunFam E2F transcription factor 1 149 222 - -
Cec08g1486 407 Gene3D - 150 222 IPR036388 -
Cec08g1486 407 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Cec08g1486 407 MobiDBLite consensus disorder prediction 49 70 - -
Cec08g1486 407 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Cec08g1486 407 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Cec08g1486 407 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec08g1486 407 MobiDBLite consensus disorder prediction 99 154 - -
Cec08g1486 407 Gene3D - 227 337 - -
Cec08g1486 407 Coils Coil 247 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1486 K06620 - - csv:101211469 659.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2351 Cec-Chr2:40745891 Cec08g1486 Cec-Chr8:26572878 1.40E-58 dispersed
Cec06g1865 Cec-Chr6:31998011 Cec08g1486 Cec-Chr8:26572878 7.30E-08 dispersed
Cec04g1183 Cec-Chr4:31425840 Cec08g1486 Cec-Chr8:26572878 2.50E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g1501 . 34 391 E2F-DP Transcription Factor Family AT3G48160 56.4 2.4e-102 369.4
Cec10g0922 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cec02g2351 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-119 426.4
Cec04g1183 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.4 3.8e-118 422.2
Cec02g2351 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 1.1e-114 410.6
Cec04g1183 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.1 5.1e-96 348.6
Cec08g1486 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 8.8e-56 214.9
Cec02g2351 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cec08g1486 . 151 400 E2F-DP Transcription Factor Family AT1G47870 53.6 6.3e-63 238.4
Cec10g0922 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cec02g2351 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 1.1e-114 410.6
Cec04g1183 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.1 5.1e-96 348.6
Cec08g1486 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 8.8e-56 214.9
Cec02g2351 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-119 426.4
Cec04g1183 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.4 3.8e-118 422.2
Cec02g2351 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cec08g1486 . 151 400 E2F-DP Transcription Factor Family AT1G47870 53.6 6.3e-63 238.4
Cec01g1501 . 34 391 E2F-DP Transcription Factor Family AT3G48160 56.4 2.4e-102 369.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30098 PF16421 E2F_CC-MB 4.30E-26 No_clan Cec TF