Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1492 ATGGGAAGGTCTCGCTCATGCTTCCAAGTAATCACATGTGGTAGCGATTCAAAGGACGAAGATGAGATCGATGTACTTGAGAGTAAGGCGTCTAAAGACAAACGAGGCTGGAGTTTCCGTAAAAGATCTTCCCAGCATCGTGTGCTAAACAACACTGTGACCGCAGAAACTCCTCCTGTAGAGAAGGAGAACCTTGAAACTGCTACATTCGACTTCCAATCATCAGCCAACTCCACTGTTCCTGAGAAACCCACTATAATACACTTCACCAATGAGGAGACCCATGTGCCTGACATCGAGAATCCTAAAGGATCTGATAAGGTGGATGTTGCATCCGAAAATGAAAGTACGGTCGAAAGTGAGGTTCAGGAGTCTACTGTTGTTGTCATCCAGGCTGGTGTCAGGGGGCTCTTGGCACAGAAGGAGCTGATTAAACTTAAGAATGTAGTAAAGGTGCAAGCTGCTGTACGTGGATTCTTGGTAAGGCGACATGCTGTGGGAACACTCCGTTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCATCTCTCCCCTGAGGGATCGTCCCCAGACGAGCTGCACAACAATAATGAGAAGGAAAATCCTGGTTCGAAGATCTTGGTGAAGGGAGAGATGACAAAATCCAACTTGAGATATATTTCAATTGAAAAGCTACTTAGCAATAGTTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAAACCAATCAAAATCAAGTGCGTTCCTTCCAAAAATGATTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCCGTTTCATCATTGGATGTCTTGGAGACGAAGAAAGAAGAATTAGTCCCTGGTCAAATGGAAGAAGAAAGTGAGGAGCCGAAGGAAGAAGAATCAGAAGAATCTGACACTGAGCAATTCAAAAGAGATATTGAGGAATCTCATCTTGAAGATCAAATTGACTCAAAACCATTGTCTGAAACAGAAAATTTGAACTCCAGCACCATCAAATCAGTTTCCCCATCTGAAAGTGAAGATTTAATTACTTATGATGCCAGTAACTTACAATCTCAGACCTCCAGTTCTCCATCTTCATTAGTAAAGGATAATCTGGAGCAGCCTTTGCCTGAGACTGCTAGAATGCCTGAAGCCGAAGAGATATCAACTAAGGTTAGTTCTGTACAACATCAGAAAATACAGATGGATGGTGTAGGTTTGCAAACAGAGTCAAACACCTCCTCTGATAAACCTCAGATGGACGTGGAGCAAGTCAATCCTCTGAAAAGATTAGCCCCCGAACAACTGGAGAATGAGGGTAAGAAATTTGTGCTTGGATCAAGAAAGGTGAACAATCCCTCATTTATCAATACCCAGGCAAAATTTGAACAGTTGAGTTTGGCACCAGATTCAATTGGAACAATTAGTTCAATGCATCAAGATGATGGAATCGAATCTCATTCAGAAACAGTATCATCTACAGCGGATACTGTACCCAGGACGAAGGAGTCAAGTGCAGAGGAAAATATTGTTCTTCCTGCATCTAGGATAACTCAAGTTGGTGGCTCTGAATGTGGCACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCTGAAGCAGGAGTGGCAGATTCACATGCAAATGATGTTTCAAAGAAAGGAGTCCAAGATCCTAGCAGTGACCTAAGCGTAGAAGTTGAAATCAAGGCTTCTACTAATCCAATGCAACATGACATTCAACTTCCTGTGGATCAACCAGAAGAAGCTGGTGAATCTAACGGTCATTCCATCACTTCAGTAGCTGTTGTAGACTCTGCCCCAAGTGAATCAAAGCTAGAGAGGAGTTCATCAGATCAACAGAGAGAGCAGGAGGCTGATACGGGTCATGATCATCCAACATATAAATCATCTCCAGAAGCTTCTCCAAGAAGTCATTTAACTGTTCCAGAATCCCAAGGAACACCTTCTAGTCAGGTATCAATAAAGGCTAAACGGGATAAATCTGATAAAACAGTCTCTTTCCTAAAGCAAAAGTCTTCATCAGCAGGAAAGAAATCACCATCCAGTTTAAATCGCAATTCTGGCTCGAGGAGTAGTACAAATAATTCTTACAAAGATCAGAAGTCTGGGAAGAGAAGAAATTCATTTGAAGCACGACAGGAAAATGTTGAAAAGGAATTAAGAGAGAGCAGTAGTAGTAGCTCTCTTCCTCATTTCATGCAAGCCACAGAATCCGCTAGAGCCAAGGCCCATTCGACCAACTCACCAAGATCAAGTCCGGATGTTCAAGATGGAGAAATATACATGAAGAAAAGGCATTCCTTACCGGCTGATGGCCGGCAAGGATCTCCACGCATTCAGCAGCAAACAACTCGAACCGAGCAGGGAGCGAAGGGAAATGAGAAAAAGTGGCGAAGGTAA 2436 43.31 MGRSRSCFQVITCGSDSKDEDEIDVLESKASKDKRGWSFRKRSSQHRVLNNTVTAETPPVEKENLETATFDFQSSANSTVPEKPTIIHFTNEETHVPDIENPKGSDKVDVASENESTVESEVQESTVVVIQAGVRGLLAQKELIKLKNVVKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRAHLSPEGSSPDELHNNNEKENPGSKILVKGEMTKSNLRYISIEKLLSNSFARQLLESTPRNKPIKIKCVPSKNDSAWKWLERWMAVSSLDVLETKKEELVPGQMEEESEEPKEEESEESDTEQFKRDIEESHLEDQIDSKPLSETENLNSSTIKSVSPSESEDLITYDASNLQSQTSSSPSSLVKDNLEQPLPETARMPEAEEISTKVSSVQHQKIQMDGVGLQTESNTSSDKPQMDVEQVNPLKRLAPEQLENEGKKFVLGSRKVNNPSFINTQAKFEQLSLAPDSIGTISSMHQDDGIESHSETVSSTADTVPRTKESSAEENIVLPASRITQVGGSECGTELSISSTLDSPDISEAGVADSHANDVSKKGVQDPSSDLSVEVEIKASTNPMQHDIQLPVDQPEEAGESNGHSITSVAVVDSAPSESKLERSSSDQQREQEADTGHDHPTYKSSPEASPRSHLTVPESQGTPSSQVSIKAKRDKSDKTVSFLKQKSSSAGKKSPSSLNRNSGSRSSTNNSYKDQKSGKRRNSFEARQENVEKELRESSSSSSLPHFMQATESARAKAHSTNSPRSSPDVQDGEIYMKKRHSLPADGRQGSPRIQQQTTRTEQGAKGNEKKWRR 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26648719 26652498 - CePI673135_08g014920.1 Cec08g1492 210134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1492 811 MobiDBLite consensus disorder prediction 475 502 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 522 541 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 304 327 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 570 584 - -
Cec08g1492 811 PANTHER IQ-DOMAIN 5-RELATED 17 775 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 328 347 - -
Cec08g1492 811 ProSiteProfiles IQ motif profile. 123 151 - -
Cec08g1492 811 SMART iq_5 122 144 IPR000048 GO:0005515(InterPro)
Cec08g1492 811 SMART iq_5 145 166 IPR000048 GO:0005515(InterPro)
Cec08g1492 811 MobiDBLite consensus disorder prediction 786 800 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 380 426 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 475 811 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 642 666 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 734 766 - -
Cec08g1492 811 Gene3D - 120 170 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 391 423 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 679 710 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 190 205 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 711 733 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 596 618 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 189 210 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 619 638 - -
Cec08g1492 811 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515(InterPro)
Cec08g1492 811 MobiDBLite consensus disorder prediction 769 783 - -
Cec08g1492 811 ProSiteProfiles IQ motif profile. 145 174 - -
Cec08g1492 811 MobiDBLite consensus disorder prediction 282 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1492 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2037 Cec-Chr5:32300140 Cec08g1492 Cec-Chr8:26648719 1.10E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62