Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1505 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAAAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACAAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCGAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTGCCGCCGCTGTTACCGCTGCCACCGCTTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCACGTGTTCAGAGGAATTCTCTACGATCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTGCCGCCGCCGCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1026 52.44 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTAAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFRGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAAAAAAPLLDPSIYPAPLNAFMAGTQFFPPSRS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26771563 26772972 + CePI673135_08g015050.1 Cec08g1505 210147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1505 341 Pfam Domain of unknown function (DUF702) 111 266 - -
Cec08g1505 341 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Cec08g1505 341 MobiDBLite consensus disorder prediction 271 303 - -
Cec08g1505 341 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 335 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cec08g1505 341 MobiDBLite consensus disorder prediction 167 186 - -
Cec08g1505 341 MobiDBLite consensus disorder prediction 277 303 - -
Cec08g1505 341 NCBIfam LRP1 C-terminal domain 217 265 IPR006511 -
Cec08g1505 341 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1505 Cec-Chr8:26771563 Cec09g1445 Cec-Chr9:21478132 6.60E-69 dispersed
Cec04g1699 Cec-Chr4:36110252 Cec08g1505 Cec-Chr8:26771563 5.50E-60 wgd
Cec05g2046 Cec-Chr5:32372190 Cec08g1505 Cec-Chr8:26771563 5.40E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30103 PF05142 DUF702 8.20E-68 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1505 K27807 - csv:101213154 537.724