Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1506 ATGGATCTGCTGCGCTCGGAGCCAATGCAATTGGTGCAGCTGATCATTCCTAATGAATCGGCGCACAGGACGATTTCTTACCTCGGCGACCTCGGTCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGCCCATTCCAGCGGACGTATGCTGCCCAGATTAAAAGATGTGGGGAAATGGCTCGGAAGCTACGGTTTTTCAGGGAGCAAATGACAAAGGCTGGTATACTGCCGTCATCAAATTCTCTAGGGACTCCTGATTTTGATTTGGATAATTTGGAGGTTAAACTTGGAGAATTTGAGGTAGAGTTGTTAGAGATAAATTACAACAACGAAAAGTTACGACGCAATTATAGTGAGCTATTGGAATATAAGCTTGTACTCCAGAAGGTTGGTGAGTTTTTCCATCTAGCTCAAAGCATAGCTGCAGCTCAGCAAAGAGAACTGGAAGTGCAGCAAAACGGTGAAGGATCCATTGACACTCCCTTATTATTGGAACAAGAAATGACAACCGATTCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGAGAAAAGGCAATGACTTTTGAAAGGATTTTGTTTCGTTCAACTAGGGGCAATCTGTATCTGAGACAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTAACTGTGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGGATAAAATTCTGAAAATATGCGACGCTTTTGGTGCAAACCGTTACCCATTCACTGATGACTTGAGCAAACAAATTCAGATGACTACAGAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATATGGGGCAACTGCACCGAAGTAAACTCTTGCAGACGATTAGCCATCAGTATGAACTGTGGAATCTTCTGGTAAAGAAGGAAAAATTTGTTTACCACACTTTGAATATGCTCAGTGTTGATGTTACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAGTGTGATGCAGATGGCAACCCTTGACAGCAACTCACAAATCGAGGCTATCTTTCATGTTTTGCAAACAAAGGAAGCACCACCAACATATTTCCGCACAAACAAATTTACTTCTTCGTTTCAAGAAATTGTGGATGCATATGGGGTTGCTAAGTATCAGGAAGCAAATCCTGGAGTCTACACTATTGTCACCTTCCCTTTCCTGTTTGCTGTAATGTTTGGCGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATTTTATAACAAGGGAGAAGAAGTTTTCCAGCCAGAAACTTGGAGATATCATTGAAATGACTTTTGGAGGTCGTTATGTTATCATGATGATGGCACTTTTTTCGATCTACACAGGACTTATCTATAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGGCCTTCTGCATACGGTTGTCATGATACTTCATGCAGGGATGCTACTACCATTGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCTAAGTGGCATGGCACGCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAGATGTCTATCCTAGTGGGAGTAGCTCAAATGAATCTAGGAATTATACTGAGCTACTTCAATGCGAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATATTCTTGAACAGCTTATTTGGTTACCTCTCACTTCTCATAATTGTAAAATGGTACTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACTGATGATCTAGGTGAAAATCAGCTTTTCGAAGGACAGAAGTTTCTTCAGCTTCTGTTACTTCTGTCTGCCCTCACTGCTGTCCCATGGATGTTATTTCCCAAGCCTTTTCTTTTGAAGAAACAAAATGAAGAAAGGCACCAAGGTCAATCCTACTCCGTACTTCACAACACAGATGAGAATCATGAAATGGAACAACACCGCGGTTCCTGCGGCCATGAGTTTGATTTCAGTGAGGTTTTTGTACACCAACTTATACATACCATAGAGTTTGTTCTTGGTGCAGTCTCTAACACAGCATCCTATCTTCGTCTATGGGCCCTCAGTCTAGCGCATTCGGAGTTGTCGAGTGTATTCTACGACAAGGTTTTAATCCTAGCTTGGGGGTTCAATAGTTTGATCATCCGAATATTAGGAATAGCCGTTTTCATTTGTGCAACTGTCGGAGTTTTACTAATTATGGAAACTCTAAGCGCATTCCTACACGCCTTGAGGCTCCATTGGGTGGAGTTTCAGAACAAATTCTATGCAGGAGATGGATTCAAATTTTCTCCCTTCTCATTTTCGTTGCTTCGGGATGAGGATGATGAGTAG 2427 41.16 MDLLRSEPMQLVQLIIPNESAHRTISYLGDLGLFQFNDLNASRSPFQRTYAAQIKRCGEMARKLRFFREQMTKAGILPSSNSLGTPDFDLDNLEVKLGEFEVELLEINYNNEKLRRNYSELLEYKLVLQKVGEFFHLAQSIAAAQQRELEVQQNGEGSIDTPLLLEQEMTTDSTKQVKLGYISGLVPREKAMTFERILFRSTRGNLYLRQAVVDGSVTDPVTVEKVEKNVFVIFYSGERAKDKILKICDAFGANRYPFTDDLSKQIQMTTEVSGKLSELKTTIDMGQLHRSKLLQTISHQYELWNLLVKKEKFVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVMQMATLDSNSQIEAIFHVLQTKEAPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFITREKKFSSQKLGDIIEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCHDTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILVGVAQMNLGIILSYFNAKFFGENINIWYQFVPQMIFLNSLFGYLSLLIIVKWYSGSQADLYHVMIYMFLSPTDDLGENQLFEGQKFLQLLLLLSALTAVPWMLFPKPFLLKKQNEERHQGQSYSVLHNTDENHEMEQHRGSCGHEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLILAWGFNSLIIRILGIAVFICATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLRDEDDE 808
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26789883 26799726 + CePI673135_08g015060.1 Cec08g1506 210148

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1506 808 PIRSF ATP6V0A1 1 808 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cec08g1506 808 PANTHER VACUOLAR PROTON ATPASES 1 805 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Cec08g1506 808 Pfam V-type ATPase 116kDa subunit family 27 799 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1506 K02154 - - csv:101209817 1462.59
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2193 Cec-Chr2:39366236 Cec08g1506 Cec-Chr8:26789883 5.10E-301 transposed
Cec02g0507 Cec-Chr2:4736066 Cec08g1506 Cec-Chr8:26789883 0.00E+00 wgd
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1033 . . . . . . . . Cmo05g00282 Cmo12g00383 . . . Car12g00408 . . Cpe07g00387 Bhi04g00220 . . . . . . Cla08g01448 Cam08g1932 Cec08g1506 Cco08g1644 Clacu08g1622 . Cre08g1408 . . Cone17ag1375 Cone20ag0107 . . . Cme03g01909 Blo17g00765 . Bda08g01248 . . Bpe05g00122 . Bma05g00148 . . . Cma12g00431 Cma05g00279 Car05g00230 . Cpe11g00231 . . . . . . . . . . . . . . . Lsi08g01352 Csa02g02102 Chy03g01413 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1722 . 1 1030 Primary Pumps ATPases(2) AT1G10130 80.0 0.0e+00 1600.9
Cec02g2193 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.9
Cec08g1506 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.8 4.8e-299 1023.8
Cec02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 4.3e-292 1000.7
Cec02g0507 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1232.6
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.3 0.0e+00 1189.1
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 1.1e-298 1022.7
Cec02g0507 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.8 0.0e+00 1233.0
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1185.2
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.2e-297 1019.2
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G34720 100.0 2.4e-57 218.4
Cec08g1497 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cec11g1625 . 59 222 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cec08g1496 . 2087 2244 Primary Pumps ATPases(2) AT1G75630 80.7 2.5e-63 238.8
Cec08g1497 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec11g1625 . 60 222 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec08g1496 . 2088 2244 Primary Pumps ATPases(2) AT2G16510 100.0 7.6e-71 263.5
Cec11g1625 . 58 179 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cec08g1496 . 2086 2207 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1497 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1339 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cec05g1886 . 4 161 Primary Pumps ATPases(2) AT2G25610 76.6 5.3e-54 208.0
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G38920 100.0 6.9e-57 216.9
Cec08g1339 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cec05g1886 . 11 161 Primary Pumps ATPases(2) AT4G32530 71.3 4.0e-56 214.9
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1667.1
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.1 0.0e+00 1667.5
Cec08g1722 . 1 1030 Primary Pumps ATPases(2) AT1G10130 80.0 0.0e+00 1600.9
Cec03g0176 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1317.8
Cec02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 95.9 1.3e-267 918.7
Cec01g0821 . 223 598 Primary Pumps ATPases(2) AT1G12840 83.5 1.1e-181 632.9
Cec09g2323 . 992 1252 Primary Pumps ATPases(2) AT3G58730 82.4 5.9e-118 420.6
Cec10g1657 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.2 7.5e-206 713.4
Cec08g1497 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec11g1625 . 60 222 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec08g1496 . 2088 2244 Primary Pumps ATPases(2) AT2G16510 100.0 7.6e-71 263.5
Cec02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 8.2e-270 926.0
Cec05g1560 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.5 1.9e-65 245.7
Cec02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 2.7e-265 911.0
Cec02g2193 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.9
Cec08g1506 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.8 4.8e-299 1023.8
Cec02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 4.3e-292 1000.7
Cec10g1502 . 100 441 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Cec05g1560 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 1.2e-90 329.7
Cec09g0167 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1170.2
Cec02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 95.9 1.3e-267 918.7
Cec02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 8.2e-270 926.0
Cec02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 2.7e-265 911.0
Cec01g0821 . 223 598 Primary Pumps ATPases(2) AT1G12840 83.5 1.1e-181 632.9
Cec09g2323 . 992 1252 Primary Pumps ATPases(2) AT3G58730 82.4 5.9e-118 420.6
Cec05g1560 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 1.2e-90 329.7
Cec05g1560 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 6.6e-76 280.8
Cec05g1560 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.5 1.9e-65 245.7
Cec10g1657 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.2 7.5e-206 713.4
Cec02g2193 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.9
Cec08g1506 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.8 4.8e-299 1023.8
Cec02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 4.3e-292 1000.7
Cec02g0507 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1232.6
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.3 0.0e+00 1189.1
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 1.1e-298 1022.7
Cec02g0507 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.8 0.0e+00 1233.0
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1185.2
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.2e-297 1019.2
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G34720 100.0 2.4e-57 218.4
Cec11g1625 . 58 179 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cec08g1496 . 2086 2207 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1497 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G38920 100.0 6.9e-57 216.9
Cec08g1497 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cec11g1625 . 59 222 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cec08g1496 . 2087 2244 Primary Pumps ATPases(2) AT1G75630 80.7 2.5e-63 238.8
Cec08g1497 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec11g1625 . 60 222 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec08g1496 . 2088 2244 Primary Pumps ATPases(2) AT2G16510 100.0 7.6e-71 263.5
Cec08g1339 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cec05g1886 . 11 161 Primary Pumps ATPases(2) AT4G32530 71.3 4.0e-56 214.9
Cec08g1339 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cec05g1886 . 4 161 Primary Pumps ATPases(2) AT2G25610 76.6 5.3e-54 208.0
Cec10g1502 . 100 441 Primary Pumps ATPases(2) AT3G28710 95.0 2.3e-194 674.9
Cec10g1502 . 100 441 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1667.1
Cec03g0176 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1317.8
Cec08g1722 . 1 1030 Primary Pumps ATPases(2) AT1G10130 80.0 0.0e+00 1600.9
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.1 0.0e+00 1667.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115