Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1508 ATGGATTATTTGTTTGCAGGTTTTGTTGTGGTAGTTGGCATGTGGAGGCCGATGGCGGATGGTGCAGATCAGATCAACAAAACGACGTCGGTTGTGAAAGTGGGTGTGGTTCTTGATTTAAGTACTTGGGTTGGGAAAATGGGTTTGAGTTGTATCAATATTTCCCTCTCCGACTTCTATTCTTCTCATCCTCAACACAACACAACAATCCTCCTCCATGTCACTGACTCTAAGGATGATCTTGTGCTGGCTGCTACTCAAGGTTCGGAGCTCATACAGAAGAGTGAAGTGGAGGCCATCCTAGGGCCAGAAAGTTCGTTCCAGGCTCCCTACATTATCCAGCTAAGTGAAAAATTTGAGGTTCCATTAATCTCATTTGCACCACCACCAACCTCCACTTTCTCTAACCTAAAATCTCCATACTTATTCCGAGCACCCTACAACCATTTCTCCCAAATTTATGCAATTTGCGACATCATTAAAGCTTTTCAATGGAAGCAAGTTGTTATCATTTACCAAGACGATGAATTTGGAAAGTGGATTGTCGCAGATCTGATCCAGGCTTTACAGGTAGAGGAAGTATACACCTATGTTCATCGAATCGACCCGGCAGCTTCTGGCGACCAACTTAGAGAAGAGCTTGAAAGATTGAGCATGAAGCAGCAAGCAACCGTTTTCGTTGTCCACATGGTTCATAGTCTGGCATCTAAAGTATTCACGATGGCCAATGAAATTGGGATAATGAGCGAAGGCTATGCTTGGATTCTCACCGAGTCCACAATAACATCCTTAAATTCTATGAATAACAACTTTTCAACTCTCAGCTGGATGCAGGGAGTTTTGGGAGTAAAAACCTACATTCCGAGAACAATGGAGGTAGACAACTTCACCATTCGATGGAGAAGGAAATTTCTAGTAGACAATCCAGAAATGATCATCAAATATTATCCAAAACCAGATGTTTTTGGACTGTGGGCTTACGATGCTACTAGAGCGCTAGCCATGGCGGTCGAGAGAAGCTTCAATATTTCTTCAGGGGCATCTCAAAATGGAAAGAAAATCATGGAGTCGCTGTCAATGATAAAATTCGAAGGTCTGAGCGGGAGGGAGTTTAGTTTGGGTAAATTAGACCAACTAGAATCACAAAATTTGCAAATAGTAAATGTAATTGGAGATGGGGAATTTAGTACAGTGGGATATTGGAAGCCTGAAATGGGTTTGACTGGAGAATTTAATAAAAAAGTTAAATTAAGACCCATTATTTGGCCAGGATACTCCTTTCAACCCCCTAAGGGAAGGATTCCATTTAATCCCAGGAAGATACTGAGGATAGAAGTTCCATTCAATCTGAGTTTTACGCCTTTCTTCATACATAACGACCACGGCATTAATGGATATTGTATAGATATCTTCCAGGCAGCTGTTGCAGAGCTTGATCCTTATTATTCTTTTCCATATGAATTTATTCCCTTCCACGGTTCATCCTACGATGACTTGATAGTGGCTGTGTACAGAGGGGAATTTGATGCTGCGGTTGGAGACATTACAATATTAGCGAACAGATCTTCGTTTGTAGATTTTACTCTGCCATTTACTGATCCTGGAATTGCTGTGATAGTTCCTAGACATGAGTCGGTGAAACATGAATGGCTATTCTTGAAGCCCTTGACTTTTAACCTTTGGATTACAAGCTTCTGCTTCTTCGTTTTCATGGGCTTCGTTGTTTGGATTCTCGAACATCAAAACAATGAAGACTTCCGTTGCGGTCCTCTGTCTCACCAAATCGCCACCAGTCTCTGGTTCTCATTCAGTATCATGGTCTTCGCCCAAAGGGAGACATTAGTGAGCAATCTATCAAGGTTAGTGGTGGTGATATGGTTCTTCGTAGTGTTCGTCCTAACACAGAGCTACACAGCTAGCTTAACGTCGTGGTTAACGGTTCAACAACTCCAATCAGTCACCGATATTGATCAGATAATTAAAAACAATGGGCATGTTGGATATCAAAAGGGCTCCTATGTTTACGACACATTAAAGTTTTTAGGCATTAAAGAAATGGTACCCTATGGCTCATTAGAGGAACTGCAGGAGCTCTTCACTAAAGGAAGCCGCAATGGTGGTATTGATGCTGCCATTGATGAGATCCCTTACATGAAGCTCCTCCTTACAACACAATTTGGTGAATATACCATGGGACCTTCTCAATACAATTCCGGTGGTTTTGGATTTGCATTTGCACAAGGTTCATCTTTGGTCGACGATATGTCGAAGGCCGTGTTGAAAGTGATGCAAAGTGATAAAATAAGCCAAATAGATAACAAGTGGTTTGGGAATAAAATCGGCCACCAATCTGTCAGTAGTGATGGTTTAGAGGCGTCTTCTTCAATCCTTGACCTGAGTTACTTTAAGAGCTTATTCTTCATCTCCGCTTTTACAGCTATCTTCGCTCTCACCTTTTATTTCATCCATTGTTTCATGTCTAAACGAAGATTCAAAGTCCATTTCAATTACTCTGACTCCACTACCATATGGAGAATAATAACTGCCACCACTTTTCGTATTCTCTTAATGAAAGACGACAACCGTCAGGAGGATCAAAATAATGTCGGACCATCGGCGGCGGTTGCAGTAATGGATGAGGCCTCTTCGAGCACCAACACCCAATTCCCATCCCCTTCATCCCACGACTCTGTCTCAAGATTTGATGATACACGTACTAGTGAGCCATATGTTTAA 2736 41.89 MDYLFAGFVVVVGMWRPMADGADQINKTTSVVKVGVVLDLSTWVGKMGLSCINISLSDFYSSHPQHNTTILLHVTDSKDDLVLAATQGSELIQKSEVEAILGPESSFQAPYIIQLSEKFEVPLISFAPPPTSTFSNLKSPYLFRAPYNHFSQIYAICDIIKAFQWKQVVIIYQDDEFGKWIVADLIQALQVEEVYTYVHRIDPAASGDQLREELERLSMKQQATVFVVHMVHSLASKVFTMANEIGIMSEGYAWILTESTITSLNSMNNNFSTLSWMQGVLGVKTYIPRTMEVDNFTIRWRRKFLVDNPEMIIKYYPKPDVFGLWAYDATRALAMAVERSFNISSGASQNGKKIMESLSMIKFEGLSGREFSLGKLDQLESQNLQIVNVIGDGEFSTVGYWKPEMGLTGEFNKKVKLRPIIWPGYSFQPPKGRIPFNPRKILRIEVPFNLSFTPFFIHNDHGINGYCIDIFQAAVAELDPYYSFPYEFIPFHGSSYDDLIVAVYRGEFDAAVGDITILANRSSFVDFTLPFTDPGIAVIVPRHESVKHEWLFLKPLTFNLWITSFCFFVFMGFVVWILEHQNNEDFRCGPLSHQIATSLWFSFSIMVFAQRETLVSNLSRLVVVIWFFVVFVLTQSYTASLTSWLTVQQLQSVTDIDQIIKNNGHVGYQKGSYVYDTLKFLGIKEMVPYGSLEELQELFTKGSRNGGIDAAIDEIPYMKLLLTTQFGEYTMGPSQYNSGGFGFAFAQGSSLVDDMSKAVLKVMQSDKISQIDNKWFGNKIGHQSVSSDGLEASSSILDLSYFKSLFFISAFTAIFALTFYFIHCFMSKRRFKVHFNYSDSTTIWRIITATTFRILLMKDDNRQEDQNNVGPSAAVAVMDEASSSTNTQFPSPSSHDSVSRFDDTRTSEPYV 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26808541 26815197 - CePI673135_08g015080.1 Cec08g1508 210150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1508 911 MobiDBLite consensus disorder prediction 879 897 - -
Cec08g1508 911 CDD GluR_Plant 440 776 - -
Cec08g1508 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 863 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cec08g1508 911 Gene3D - 706 785 - -
Cec08g1508 911 FunFam Glutamate receptor 549 679 - -
Cec08g1508 911 Pfam Ligand-gated ion channel 778 810 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec08g1508 911 Pfam Receptor family ligand binding region 51 391 IPR001828 -
Cec08g1508 911 Gene3D - 151 311 - -
Cec08g1508 911 MobiDBLite consensus disorder prediction 879 911 - -
Cec08g1508 911 FunFam Glutamate receptor 437 549 - -
Cec08g1508 911 CDD PBP1_GABAb_receptor_plant 33 408 IPR044440 -
Cec08g1508 911 SMART GluR_14 443 778 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cec08g1508 911 Pfam Bacterial extracellular solute-binding proteins, family 3 448 557 IPR001638 -
Cec08g1508 911 SUPERFAMILY Periplasmic binding protein-like II 435 779 - -
Cec08g1508 911 Gene3D - 24 372 - -
Cec08g1508 911 Gene3D - 550 680 - -
Cec08g1508 911 PIRSF IGluLR_plant 3 909 IPR017103 -
Cec08g1508 911 SUPERFAMILY Periplasmic binding protein-like I 30 432 IPR028082 -
Cec08g1508 911 Gene3D - 441 549 - -
Cec08g1508 911 FunFam Glutamate receptor 148 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1508 K05387 - - csv:101213397 999.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1477 Cec-Chr7:30355779 Cec08g1508 Cec-Chr8:26808541 2.10E-157 dispersed
Cec08g1436 Cec-Chr8:26149366 Cec08g1508 Cec-Chr8:26808541 2.80E-126 dispersed
Cec08g1437 Cec-Chr8:26151920 Cec08g1508 Cec-Chr8:26808541 3.70E-31 dispersed
Cec08g1438 Cec-Chr8:26154016 Cec08g1508 Cec-Chr8:26808541 9.40E-218 dispersed
Cec08g1508 Cec-Chr8:26808541 Cec11g1930 Cec-Chr11:33463121 4.80E-106 dispersed
Cec08g1508 Cec-Chr8:26808541 Cec08g0999 Cec-Chr8:21821347 2.00E-197 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202