Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1569 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAAAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGATGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTGCTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTCCAACGTCAACAAAACCAGCCCAACAAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCTTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCCGACTTGGATTTGGGAGCGAGCCCACTACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGCGGCGGGGGGAATAATGGGCTATGA 1380 55.36 MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRMSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMATAAAAGVAVASSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVASNVNKTSPTNGGGTSVFAGVFASSLPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLRLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27281530 27284239 + CePI673135_08g015690.1 Cec08g1569 210211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1569 459 Gene3D Classic Zinc Finger 62 104 - -
Cec08g1569 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cec08g1569 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cec08g1569 459 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Cec08g1569 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cec08g1569 459 SMART c2h2final6 138 158 IPR013087 -
Cec08g1569 459 SMART c2h2final6 62 84 IPR013087 -
Cec08g1569 459 SMART c2h2final6 103 133 IPR013087 -
Cec08g1569 459 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Cec08g1569 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 196 - -
Cec08g1569 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Cec08g1569 459 FunFam protein indeterminate-domain 12-like 41 109 - -
Cec08g1569 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cec08g1569 459 Gene3D Classic Zinc Finger 117 193 - -
Cec08g1569 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 378 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0227 Cec-Chr3:2458314 Cec08g1569 Cec-Chr8:27281530 3.80E-78 dispersed
Cec07g0994 Cec-Chr7:24312143 Cec08g1569 Cec-Chr8:27281530 4.00E-89 dispersed
Cec08g1569 Cec-Chr8:27281530 Cec09g0710 Cec-Chr9:6352375 1.30E-80 dispersed
Cec04g1633 Cec-Chr4:35643273 Cec08g1569 Cec-Chr8:27281530 1.80E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30109 PF12874 zf-met 0.0032 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1569 K25869 - csv:101217471 700.664