Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1625 ATGGGAATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGACTCTTCCCCTTTCAAGTCCTCCCCTAGTAAGCAGGTCAAGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGGCTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTCTATGCTTCGGATGAAGCAAGAAAAAATTCCTTTGAAAGAGCTCAGGAGTTACAATCCGGATTGGAGCCGAATTATCCAATCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTGCTCATTTCTGCAAGATGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGCCTTTTCAATTGCTCATAAGTTAGCAGATGGAGATGCTGTGGTTTTTCAACGCATTAAACCTACAGCCTGCAAGGTCTACATCTTCAGGGCGGATGGTTCTAAAGAGGATAGTGATTCTAACAGTAGCTAA 690 44.93 MGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPFKSSPSKQVKPRVTQKQLVVVRRSSRVAKQSAPVYAEVLVDRLAIPRRISRARDFSDQFYASDEARKNSFERAQELQSGLEPNYPICIKSMVRSHVSGCFWLGLPAHFCKMHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKAFSIAHKLADGDAVVFQRIKPTACKVYIFRADGSKEDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27641935 27643686 + CePI673135_08g016250.1 Cec08g1625 210267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1625 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Cec08g1625 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Cec08g1625 229 Gene3D - 102 219 IPR015300 -
Cec08g1625 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Cec08g1625 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677(InterPro)
Cec08g1625 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Cec08g1625 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1625 Cec-Chr8:27641935 Cec08g1626 Cec-Chr8:27647340 3.60E-103 tandem
Cec02g0622 Cec-Chr2:6231105 Cec08g1625 Cec-Chr8:27641935 1.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30116 PF02362 B3 2.30E-12 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1625 - - - 0.0