Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec08g1646 | ATGGACGGTGCTGATGGGACTGTGAGGCTTGGGGCAGTGAACTTGAAGCCGGATCGGAGCGCCTTTGATTTAGGCCCCGATGTGTCTGTTTCGTCTCCGGTCACAAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATAGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGACAGACGAAGAACTCTTCAACGAAGAGCGCAAGAAGCTCAGATGTCGGCTGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTTATTGGTAAAGGTGCATTCGGCGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGATTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGACAAGTATTCAAGTATACTTTTGAATGAAGAAGACCTAACTGCCCAGCAGGCCAAAAATGAAGGTCAAGGTCATGCTGACTCTAATGGATCCCATTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTACTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTTCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCCAGAATTTCAGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGCATTCAGTGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACTGTTACTGGAGAACTAGACACTCAGAACTTTGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCTGAAATGCCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACAGATGTGCATTCAAACACATCATCAAAATCACCATCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACAGTGATACCAGAAGTTGAACAACAGCAGGAAGCATAA | 1572 | 42.24 | MDGADGTVRLGAVNLKPDRSAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRAQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNEEDLTAQQAKNEGQGHADSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPRISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDVHSNTSSKSPSLVSLLGRIDLQETVIPEVEQQQEA | 523 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27815096 | 27819810 | - | CePI673135_08g016460.1 | Cec08g1646 | 210288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec08g1646 | 523 | Gene3D | Phosphorylase Kinase; domain 1 | 99 | 193 | - | - | |
Cec08g1646 | 523 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 41 | 478 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Cec08g1646 | 523 | FunFam | Non-specific serine/threonine protein kinase | 310 | 429 | - | - | |
Cec08g1646 | 523 | Pfam | Protein kinase C terminal domain | 430 | 474 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | SMART | serkin_6 | 108 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | ProSitePatterns | Protein kinases ATP-binding region signature. | 114 | 137 | IPR017441 | GO:0005524(InterPro) | |
Cec08g1646 | 523 | ProSiteProfiles | Protein kinase domain profile. | 108 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 412 | 484 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | Gene3D | Transferase(Phosphotransferase) domain 1 | 194 | 428 | - | - | |
Cec08g1646 | 523 | Pfam | Protein kinase domain | 308 | 411 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | Pfam | Protein kinase domain | 108 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | FunFam | Non-specific serine/threonine protein kinase | 79 | 191 | - | - | |
Cec08g1646 | 523 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 227 | 239 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cec08g1646 | 523 | Coils | Coil | 57 | 101 | - | - | |
Cec08g1646 | 523 | CDD | STKc_NDR_like | 106 | 475 | - | - | |
Cec08g1646 | 523 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 463 | IPR011009 | - | |
Cec08g1646 | 523 | CDD | MobB_NDR_LATS-like | 42 | 103 | - | - | |
Cec08g1646 | 523 | FunFam | Non-specific serine/threonine protein kinase | 192 | 259 | - | - | |
Cec08g1646 | 523 | SMART | pkinase_C_6 | 412 | 476 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g1858 | Cec-Chr6:31937018 | Cec08g1646 | Cec-Chr8:27815096 | 1.40E-56 | dispersed | |
Cec08g1646 | Cec-Chr8:27815096 | Cec09g0776 | Cec-Chr9:7105483 | 5.20E-174 | dispersed | |
Cec08g1646 | Cec-Chr8:27815096 | Cec05g1987 | Cec-Chr5:31886686 | 5.60E-168 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
72218 | PF00069 | Pkinase | 1.10E-64 | CL0016 | Cec | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec08g1646 | K08790 | - | csv:101222805 | 1004.97 |