Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1655 ATGGATATGGCGGACGCGGAGCATGCAATTAAGTGGGGAAGGGATGAGATGGATATTGTGAGTGTGATTGAGCAGATGGGAAAATTTGGAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTAAGTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTTTTTTAATTATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCCCTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCTGCCGCCACCAACCCCCCCCCCCCCCCCCTCCGCCGCCGCCTACCCCTTTCCCACAGCCATCTTCTCCGCTGGGACTACTAA 720 49.44 MDMADAEHAIKWGRDEMDIVSVIEQMGKFGENLEYNEVAASSSDFAFGSPNIGVSVTTSTSPPIFPFFNYLPPSTALSISNATAPPPFPPYSAAAPSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAATNPPPPPLRRRLPLSHSHLLRWDY 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27890832 27891909 - CePI673135_08g016550.1 Cec08g1655 210297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1655 239 Gene3D - 148 211 IPR036638 GO:0046983(InterPro)
Cec08g1655 239 FunFam BHLH transcription factor 155 218 - -
Cec08g1655 239 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Cec08g1655 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
Cec08g1655 239 Pfam Helix-loop-helix DNA-binding domain 161 202 IPR011598 GO:0046983(InterPro)
Cec08g1655 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 211 IPR036638 GO:0046983(InterPro)
Cec08g1655 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 108 214 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1338 Cec-Chr2:30386777 Cec08g1655 Cec-Chr8:27890832 1.40E-37 dispersed
Cec07g1468 Cec-Chr7:30276497 Cec08g1655 Cec-Chr8:27890832 2.60E-22 dispersed
Cec08g1655 Cec-Chr8:27890832 Cec09g0037 Cec-Chr9:357015 8.00E-29 dispersed
Cec08g1655 Cec-Chr8:27890832 Cec08g1663 Cec-Chr8:27954557 1.50E-06 proximal
Cec04g1234 Cec-Chr4:31887456 Cec08g1655 Cec-Chr8:27890832 1.30E-36 transposed
Cec05g2218 Cec-Chr5:33719264 Cec08g1655 Cec-Chr8:27890832 8.00E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30119 PF00010 HLH 1.50E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1655 - - - 0.0