Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1664 ATGCCTGGCATGCTTGCTTGCTGTGCCATCCTTCCCTTGATGGTGAATTATGGCCCTGGCAGCAAAGAAAGGAAACCAAATCTCAAGTTTAGGAATGGGACCCATGAAAGGAAAATGGTGAAATTGGAAGCAAAAGAGAAGGAGAAGGAGAAGGAGAAGGAAGAAGAAGAAGGAAGTGGGAAAGTGGGGTTGAAGATCAACCCTTTTTTCCCCTTTTCAAATTTCAAATTTCCCATCTCCTTTGGGACATTTACATTTTCTCTAATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACAATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAATCGAATACCAGATTATTTATTACCTACTTCTGATATAAATTCTGGATATGTAAGCTCTGTGAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACCGAGGTTCTGCCTGATGAGCAGAAAGCTGAAATTGGATGGTCTTCACTGACTCGTGATGCAGATGGTCCTGTTACCGAAAACCGACTCTGTGAGCCATCAAATAATCCATCACTGGGTCATTTGAACTTGAGCCCACTGATTATACAAAATTCTAATTCTAACTCTAATGCTATTCCTCATAATCTCAACTTAAATGCAAGTTTTGCTAGTCATGGAGGCGACAATAGCAGAGTTAATGAAGGTACTAATGTATATAAATCTAGTGGATCAGAAGAAGGGAGGATTTTGTGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTACAAATGACGGTAGAGCAGGCTCTTCCTTGGATGGGCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGTGGAAGCAGTAACTACTCGCAGCATATTGAAAGTGGCTCGGAGCCCCATCTTCCAGTGTTCCCTGGTCGCTACAACACAGGCAGTAGGTTGAGCATACCTCCTCCACCAGCACGAATGAATCAGGCCCCTGTACGAGGTGCAGGTGAACTGACTTCCAACAGCTTCTCTGAGTCAATTGTTGCGGAAAGCTCAGACAGTTCTCATAGAAACTATCGTGTAAGGATTAGTTCATCAAATGCTCAAGATTCTTTTGCATCAGCAGGAACTGCTGTTAGGCATCCTGGGCCACCATCTTCCCAGCTGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATGTATCAGCTCAAGGTCAGCCAATTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCAGTTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAAGAGGTGAGACCAAGCAACATGGGAAGAACCGTATCCGAACATCCTATGTTTGTCCCGGCAAATGAGCTGAGGAGTTTGGTTCGAAGTCCATCAAGTAGAGCTTTAGCATCTTCGAACTTGTCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTACAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAGAATTCTCCGACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTGCTTCTGCTACAAATGAGTCTGGAGGAAGGACAAATAATTATTCACAGCGATCAGGTTCCACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGACACCATTTATTGCAACCAAGGTCTGCATTATGGATGGAAAGAAGAGGTGATGGTGGACTTGGTCTTCCCTATTCATTACGAACTTTGGCTACTTCCGGTGAAGGAAGTGACAATAACAGACTTGTATCTGAGCACATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTCGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGACGTTGATAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGTATTGGGAATGTCAACACAGGACTAAGTGAAGAGACAATAGTTGCTCGACTGAAACAAAAGAAGCGGGTGAATGCTGTTGACTCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTTGAAGGAGAAGACGTTGGAACGCTGGAATGCGGGCATGACTTCCACACAGCTTGTATTAAGCAGTGGCTGATGCAAAAGAATCTGTGCCCCATATGCAAAACAACTGGTTTGGCAAGCCGAGAATGA 2406 45.01 MPGMLACCAILPLMVNYGPGSKERKPNLKFRNGTHERKMVKLEAKEKEKEKEKEEEEGSGKVGLKINPFFPFSNFKFPISFGTFTFSLMQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDINSGYVSSVSHEQRSLSRWSLGEPSSCDMQTEVLPDEQKAEIGWSSLTRDADGPVTENRLCEPSNNPSLGHLNLSPLIIQNSNSNSNAIPHNLNLNASFASHGGDNSRVNEGTNVYKSSGSEEGRILCSSASDPLLLPSGNSGLPVVTNDGRAGSSLDGRRAPCKRKSIEGNVAQSSLSGSSNYSQHIESGSEPHLPVFPGRYNTGSRLSIPPPPARMNQAPVRGAGELTSNSFSESIVAESSDSSHRNYRVRISSSNAQDSFASAGTAVRHPGPPSSQLPARLLPAEHVLDLRPAPAVDNVSAQGQPIMIHVPALPRSLQPYRWNGSSTSRSGSSSSSAGERQVVQREEVRPSNMGRTVSEHPMFVPANELRSLVRSPSSRALASSNLSIPGNVASTSRVGTSSGVHPSSGPWIPPENSPTQFPRRLTEYVRRQLFASATNESGGRTNNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLATSGEGSDNNRLVSEHIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVARLKQKKRVNAVDSQVEEEPCCVCQEEYVEGEDVGTLECGHDFHTACIKQWLMQKNLCPICKTTGLASRE 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27961351 27969752 - CePI673135_08g016640.1 Cec08g1664 210306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1664 801 MobiDBLite consensus disorder prediction 311 331 - -
Cec08g1664 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 796 IPR013083 -
Cec08g1664 801 MobiDBLite consensus disorder prediction 580 615 - -
Cec08g1664 801 SUPERFAMILY RING/U-box 746 795 - -
Cec08g1664 801 SMART ring_2 752 792 IPR001841 -
Cec08g1664 801 Pfam Ring finger domain 752 793 IPR001841 -
Cec08g1664 801 MobiDBLite consensus disorder prediction 580 607 - -
Cec08g1664 801 ProSiteProfiles Zinc finger RING-type profile. 752 793 IPR001841 -
Cec08g1664 801 MobiDBLite consensus disorder prediction 525 564 - -
Cec08g1664 801 MobiDBLite consensus disorder prediction 279 338 - -
Cec08g1664 801 FunFam E3 ubiquitin-protein ligase MBR2 720 797 - -
Cec08g1664 801 MobiDBLite consensus disorder prediction 461 506 - -
Cec08g1664 801 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 301 798 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
Cec08g1664 801 MobiDBLite consensus disorder prediction 463 485 - -
Cec08g1664 801 Coils Coil 32 59 - -
Cec08g1664 801 MobiDBLite consensus disorder prediction 525 551 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1664 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1628 Cec-Chr1:30913048 Cec08g1664 Cec-Chr8:27961351 8.60E-26 dispersed
Cec07g1086 Cec-Chr7:25999651 Cec08g1664 Cec-Chr8:27961351 6.20E-31 dispersed
Cec08g0614 Cec-Chr8:17674225 Cec08g1664 Cec-Chr8:27961351 1.50E-15 dispersed
Cec08g1664 Cec-Chr8:27961351 Cec11g1820 Cec-Chr11:32381968 3.60E-25 dispersed
Cec08g1664 Cec-Chr8:27961351 Cec08g1305 Cec-Chr8:25007088 8.90E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55