Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1665 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGTTAGAAGATCATAATGTCAAGGGTTATTGCAATTTGCAATCGCATAGCTGTTCCTCGATCTTGGATCCTACTTCCCAACTTCACAATCTGTTCATCAACTATCTCAATTCTCAAAATGAGGCAGGAGAGGTCGGTAGATGTTTCTCTGTTGCACATTTTTCCGGGATGTGCAAAAATCACAGTGCTGTAGAAGAGCCATTGATAATTGGATTTTTGCCTAAAAATTTGGAGCAAGAATACAACTTCCAGTCTGCTGGCTCGACGGTTGCTTTTGTCACTTTCCTGTCTAACTTCCTGACGATGTGGTCTGATAAGGCTTTTGCCTTGGACTTCTGCGCTCTTGACAAGTTTCGGAGTGGTCGCATGAAGGTTATGTGGCTGCTTGGAAAGTTCAACGTTCACTGGTCTTGTATTTTGGAGACAGCTAGATTTGTCATCTTGGCGTAG 1050 46.0 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLLEDHNVKGYCNLQSHSCSSILDPTSQLHNLFINYLNSQNEAGEVGRCFSVAHFSGMCKNHSAVEEPLIIGFLPKNLEQEYNFQSAGSTVAFVTFLSNFLTMWSDKAFALDFCALDKFRSGRMKVMWLLGKFNVHWSCILETARFVILA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27970519 27980181 - CePI673135_08g016650.1 Cec08g1665 210307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1665 349 FunFam WUSCHEL-related homeobox 4 95 162 - -
Cec08g1665 349 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Cec08g1665 349 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Cec08g1665 349 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cec08g1665 349 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Cec08g1665 349 Gene3D - 95 162 - -
Cec08g1665 349 MobiDBLite consensus disorder prediction 64 102 - -
Cec08g1665 349 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 208 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cec08g1665 349 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Cec08g1665 349 MobiDBLite consensus disorder prediction 153 183 - -
Cec08g1665 349 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1726 Cec-Chr4:36280308 Cec08g1665 Cec-Chr8:27970519 8.90E-20 dispersed
Cec06g1636 Cec-Chr6:29965907 Cec08g1665 Cec-Chr8:27970519 2.60E-22 dispersed
Cec08g1665 Cec-Chr8:27970519 Cec11g0658 Cec-Chr11:7227661 3.80E-19 dispersed
Cec08g1665 Cec-Chr8:27970519 Cec01g1608 Cec-Chr1:30740878 3.00E-24 transposed
Cec08g1665 Cec-Chr8:27970519 Cec03g0160 Cec-Chr3:1585439 3.00E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30122 PF00046 Homeodomain 2.00E-18 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1665 - - - 0.0