Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1682 ATGATCTCGTACGAGGAGATTCGAACCGGCACTGCAAATTTCAGTGAGGAAAATTTGGTGGGAAAAGGAAGTTTTGGGTCAGTTTACAAAGGGTATCTAAATCTAAATGAAATAGAAGGGGGAGTTTTTGCAATCAAAGTGTTGAACATTGAACGAAGTGGGTATATTAAGAGCTTTTTGGCGGAGTGTGAAGCATTGAGAAACGTGAGGCATAGGAATTTAGTGAAGCTCATTACATCTTGCTCGAGTATAGACTATGAAGGGAGGGATTTTAGAGGTTTGGTTTATGAGTTTTTGTGTAATGGAAGCTTGGAGGAGTGGATTCATGGGGAAAGGCATCACTTGGATGGAAGTGGGCTGGATTTAATGGAGAGATTGAACATTGGGATTGATGTTGGGTGTGCTTTGGAGTATCTTCACCATGGCTGTCAAATGCCAATTGTTCACTGTGATTTGAAGCCTACTAACATTCTGTTGGGGGAAGATATGAGTGCAAAAGTTGGGGACTTTGGGTTGGCCAGGTTGTTGATGGAAAATGAAGCAAATCAATATTTTTCCATCACTTCCTCTCGTGTTCTTAAAGGTTCTATTGGTTACATTCCTCCAGGTTTGTGCTTTCACATCCTAATACATAAATTTAGTTTTGAGTAG 651 40.4 MISYEEIRTGTANFSEENLVGKGSFGSVYKGYLNLNEIEGGVFAIKVLNIERSGYIKSFLAECEALRNVRHRNLVKLITSCSSIDYEGRDFRGLVYEFLCNGSLEEWIHGERHHLDGSGLDLMERLNIGIDVGCALEYLHHGCQMPIVHCDLKPTNILLGEDMSAKVGDFGLARLLMENEANQYFSITSSRVLKGSIGYIPPGLCFHILIHKFSFE 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28103832 28104482 - CePI673135_08g016820.1 Cec08g1682 210324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1682 216 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Cec08g1682 216 SUPERFAMILY Protein kinase-like (PK-like) 2 208 IPR011009 -
Cec08g1682 216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g1682 216 FunFam Os07g0541700 protein 99 192 - -
Cec08g1682 216 ProSitePatterns Protein kinases ATP-binding region signature. 20 46 IPR017441 GO:0005524(InterPro)
Cec08g1682 216 SMART serkin_6 14 214 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1682 216 ProSiteProfiles Protein kinase domain profile. 14 216 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1682 216 Pfam Protein kinase domain 15 202 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1682 216 Gene3D Transferase(Phosphotransferase) domain 1 99 212 - -
Cec08g1682 216 PANTHER OS04G0122200 PROTEIN 2 203 IPR051809 -
Cec08g1682 216 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1682 Cec-Chr8:28103832 Cec08g1690 Cec-Chr8:28121031 2.40E-72 dispersed
Cec08g1682 Cec-Chr8:28103832 Cec08g1685 Cec-Chr8:28109033 4.60E-76 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72220 PF00069 Pkinase 2.50E-28 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1682 - - - 0.0