Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1690 ATGGGAGCTCAAACCCCTGTTGTTGAGTTTGCCATATTGGTTGCAATTTTAGCTTTCACACCCTCATTTTCCTTGGTTGGATCAGCCAGTTTGAGCATTGAAACAGACAAACAGGCCTTGATTTCAATCAAATCTGGATTTACCAATCTCAAGCCTTCAAATCCTCTGTCTTCTTGGGATAATTCAAACTCTTCCCCTTGCAACTGGACTCGTGTCAGTTGCAACAAAGATGGCAATAGAGTTGTTGGTCTTGATCTTTCAAGCTTGCAACTTTCAGGCTCCTTAGACCCTCATATTGGCAACCTCACTTTCCTTCATTCCCTTCAGCTTCAAAACAACCTCTTAACAGGACTAATTCCACATCAAATTTTTAACCTTTTTCGCCTCGTTCTCCTCAACATGAGCTTCAACTCCCTTGAAGGTGGATTCCCTTCCAACATCAGTGCCATGGCTGCCCTTGAGGCCCTTGACTTAACTTCCAATAACTTAACATCCACTCTTCCTGATGAGCTCAGTCTTTTAACCAACCTTAAAGTCTTGAAATTGGCACAAAATCATCTTTTGGGTGAAATCCCACCTTCATTTGGCAACCTTTCTTCTCTTGTCACCATAAATTTTGGTACAAATTCTCTTACTGGCCCAATTCCAACCGAGCTGAGTCGTCTTCGAAATCTTAAGGATCTTATCATCACCCTCAACAATCTCACTGGCACTGTTCCTCCTGCCATATACAACATGTCATCTTTAGTTACTCTGGCCCTGGCTTCCAACAAACTATGGGGAACATTTCCAGTGGATATTGGTGATACACTCCCCAAACTTTTAGTCTTCAACTTCTGTTTCAATGAATTTACAGGAACAATTCCTCCTTCATTGCATAATATTACTAATATTCAAGTCATTCGTTTTGCTTACAATTTTCTTGAAGGGACAGTCCCACCAGGTTTGGACAATCTCCATAACCTTACTATGTACAATATTGGGTACAATAAGCTCAGCTCCGGCAAAGATGGGATTAGTTTCATCACTTCTTTGACAAAAAGCTCTCGCCTTTCGTTTCTTGCCATTGATGGCAACAATTTTGAAGGTCAAATTCCAGAGTCCATTGGGAATCTTTCTAAATCTCTTTCCATATTGTTTATGGGAGGGAATCATCTCTCTGGTAATATACCTCCCACAGTTGGGAATTTAAATGACTTGGCTTTGCTGAATTTGAGCTATAATTCATTATCAGGCGAAATCCCATCTGAGATTGGCCAATTGGAGAACCTCCAAAGCCTCGTTTTGGCCAAAAATCAGTTCTCAGGTTCCATTCCAAGCTCCTTGGGAAATCTTCAAAAGTTGACCAATCTTGATTTATCTGGAAATGAGTTAATTAGTGGCATTCCAACCTCTTTCAACAACTTCCAGAAGCTTCTTTCCATGGATTTATCCAACAATCAGCTAAATGGAAGCATACCCAAAGAAGCCCTCGATCTCCCTGCCATTATTAGATTGAACATGTCCAACAATCTTCTTACTGGTCCTCTCCCTGAGGAAATTGGGTACCTTGCAAATCTCTTACAGATTGATCTCTCCAGCAATCTCATATCTGGAGAGATTCCTTCGTCGATCAAAGGTTGGAGGAGCATGGAGAGATTGTTTATGGCGAGAAATAAGTTATCAGGTCCCATTCCCAATAATCTAGGACAACTCAGAGCCATCGAAATTATTGATCTCTCCTCAAACCTACTATCTGGTCCCATCCCTGATAATATTCAATATCTATTAGCTCTTCAGTATCTGAATCTCTCTTTTAATGACCTTGAGGGAGAAGTTCCTAAAGGGGGAATCTTTAAAAGCAGGGCCAATGTCAGTTTACAAGGAAACTCAAAGCTTTGCTTGTATTCCTCATGTACAAAGAGTGATTCTAAACATGGCAAAGCAGTCAAAGTCATAATCTTATCGGCTGTGTTTTCAACACTGGCACTCTGCTTTATCATTGGGACGCTGATCCATTTCTTGAGGATGAAGTCAAAGACTGCACCATTCACTGAGTTGCTAGAAGATCAACATGAAATGGTGTCTTATGATGAGCTGCGTTTGGCAACAGAGAATTTCAACGAGAAAAACTTGATTGGAAAAGGGAGCTTTGGATCTGTGTATAAGGGAAATTTAAAGCAAGATATCCCTGTGGCTATTAAGGTTCTTGATGTTAACAGGACTGGTTCTATAAGGAGCTTTAAGGCCGAGTGTGAAGCTTTGAAGAACGTGAGACATCGAAATCTGGTTAAACTCATCACATCATGCTCTAGCATAGACTTCTCAAACATGGAATTTCGAGCTTTGGTTTATGAACATTTGAGCAATGGGAGCTTGGATGAGTGGGTTCATGGCCAAAGTAGTCGTGAACCTGGAATTGGGCTCAATATCCTTGAGCGAGTAAACATTGCCATCGATGTTGCTTCAGCAATAAATTACTTGCACCACGATTGTGAACTTCCTATAGTTCACTGCGATTTAAAGCCTAGCAACATTCTTCTAGATGCAGACATGACTGCAAAAGTTGGAGATTTTGGATTGGCTCGGTTTCTAATGGAAAATGCAAACACTCAATCTTCCATCACTTCCACACATGTCCTAACAGGTTCTATCGGTTATCTTCCTCCAGAGTATGGTTTTGGGATGAAGGCAACAACAGCTGGGGATGTGTACAGTTTTGGAGTAACATTGCTGGAGCTTTTTACAGGGAAGAGTCCAACAGACGAATGTTTCACTGGAGAATTGAATTTGATAAAATGGGTGGAGTCGTGTTATCCAGAAGATATAATGGAAATGATTGATCATAAGTTGCCAGAGCTTTTTGTGGATTTGGAATACAAAGGTCGAACCATCAGTCCAGATATGCAAAAAGATTGTTTGATCGAAGTAATTGGAGTTGCACTGTCATGCACGGTGAATACTCCAGTAAACCGCATTGACATGGAGGATGTGGTTTCAAAGCTTAGGAGGGCCAAAGACAACCTTCTTCGCCCTCCAAAGAAAAGTGCTGTGTTTTAG 3039 41.03 MGAQTPVVEFAILVAILAFTPSFSLVGSASLSIETDKQALISIKSGFTNLKPSNPLSSWDNSNSSPCNWTRVSCNKDGNRVVGLDLSSLQLSGSLDPHIGNLTFLHSLQLQNNLLTGLIPHQIFNLFRLVLLNMSFNSLEGGFPSNISAMAALEALDLTSNNLTSTLPDELSLLTNLKVLKLAQNHLLGEIPPSFGNLSSLVTINFGTNSLTGPIPTELSRLRNLKDLIITLNNLTGTVPPAIYNMSSLVTLALASNKLWGTFPVDIGDTLPKLLVFNFCFNEFTGTIPPSLHNITNIQVIRFAYNFLEGTVPPGLDNLHNLTMYNIGYNKLSSGKDGISFITSLTKSSRLSFLAIDGNNFEGQIPESIGNLSKSLSILFMGGNHLSGNIPPTVGNLNDLALLNLSYNSLSGEIPSEIGQLENLQSLVLAKNQFSGSIPSSLGNLQKLTNLDLSGNELISGIPTSFNNFQKLLSMDLSNNQLNGSIPKEALDLPAIIRLNMSNNLLTGPLPEEIGYLANLLQIDLSSNLISGEIPSSIKGWRSMERLFMARNKLSGPIPNNLGQLRAIEIIDLSSNLLSGPIPDNIQYLLALQYLNLSFNDLEGEVPKGGIFKSRANVSLQGNSKLCLYSSCTKSDSKHGKAVKVIILSAVFSTLALCFIIGTLIHFLRMKSKTAPFTELLEDQHEMVSYDELRLATENFNEKNLIGKGSFGSVYKGNLKQDIPVAIKVLDVNRTGSIRSFKAECEALKNVRHRNLVKLITSCSSIDFSNMEFRALVYEHLSNGSLDEWVHGQSSREPGIGLNILERVNIAIDVASAINYLHHDCELPIVHCDLKPSNILLDADMTAKVGDFGLARFLMENANTQSSITSTHVLTGSIGYLPPEYGFGMKATTAGDVYSFGVTLLELFTGKSPTDECFTGELNLIKWVESCYPEDIMEMIDHKLPELFVDLEYKGRTISPDMQKDCLIEVIGVALSCTVNTPVNRIDMEDVVSKLRRAKDNLLRPPKKSAVF 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28121031 28124182 - CePI673135_08g016900.1 Cec08g1690 210332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1690 1012 FunFam Inactive leucine-rich repeat receptor-like protein kinase 343 636 - -
Cec08g1690 1012 SUPERFAMILY RNI-like 239 607 - -
Cec08g1690 1012 ProSiteProfiles Protein kinase domain profile. 700 1003 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1690 1012 Gene3D Phosphorylase Kinase; domain 1 663 780 - -
Cec08g1690 1012 Pfam Leucine Rich Repeat 423 445 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 375 397 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 402 421 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 568 589 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 153 172 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 519 540 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 351 372 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 SMART serkin_6 700 1003 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g1690 1012 CDD STKc_IRAK 706 995 - -
Cec08g1690 1012 Gene3D Ribonuclease Inhibitor 30 94 IPR032675 -
Cec08g1690 1012 Gene3D Ribonuclease Inhibitor 95 337 IPR032675 -
Cec08g1690 1012 SUPERFAMILY Protein kinase-like (PK-like) 681 995 IPR011009 -
Cec08g1690 1012 Gene3D Transferase(Phosphotransferase) domain 1 781 1006 - -
Cec08g1690 1012 FunFam Leucine-rich repeat receptor-like protein kinase 33 193 - -
Cec08g1690 1012 SMART LRR_typ_2 174 197 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 150 173 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 445 468 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 397 421 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 102 126 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 517 540 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 469 493 IPR003591 -
Cec08g1690 1012 SMART LRR_typ_2 589 614 IPR003591 -
Cec08g1690 1012 Pfam Protein tyrosine and serine/threonine kinase 703 995 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g1690 1012 SUPERFAMILY L domain-like 34 333 - -
Cec08g1690 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 232 340 - -
Cec08g1690 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g1690 1012 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Cec08g1690 1012 Gene3D Ribonuclease Inhibitor 338 637 IPR032675 -
Cec08g1690 1012 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524(InterPro)
Cec08g1690 1012 Pfam Leucine rich repeat 447 506 IPR001611 GO:0005515(InterPro)
Cec08g1690 1012 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 780 - -
Cec08g1690 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 781 1008 - -
Cec08g1690 1012 PANTHER OS04G0122200 PROTEIN 44 996 IPR051809 -
Cec08g1690 1012 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1682 Cec-Chr8:28103832 Cec08g1690 Cec-Chr8:28121031 2.40E-72 dispersed
Cec08g1684 Cec-Chr8:28105244 Cec08g1690 Cec-Chr8:28121031 4.10E-07 dispersed
Cec08g1685 Cec-Chr8:28109033 Cec08g1690 Cec-Chr8:28121031 5.60E-140 dispersed
Cec08g1686 Cec-Chr8:28114840 Cec08g1690 Cec-Chr8:28121031 3.60E-96 dispersed
Cec08g1687 Cec-Chr8:28115702 Cec08g1690 Cec-Chr8:28121031 4.40E-38 dispersed
Cec08g1690 Cec-Chr8:28121031 Cec10g2139 Cec-Chr10:35935836 1.10E-82 dispersed
Cec08g1688 Cec-Chr8:28116747 Cec08g1690 Cec-Chr8:28121031 6.70E-13 proximal
Cec08g1689 Cec-Chr8:28117565 Cec08g1690 Cec-Chr8:28121031 4.90E-23 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72223 PF07714 PK_Tyr_Ser-Thr 1.00E-39 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1690 - - - 0.0