Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1709 ATGGCAGCCGTGGGAGGGACTCGAAGTGGCGACCGCCGGTCGGTGGAGCTTCGGATGATCTGCAAATGGAACCGTGGAGGGAGGAGATGGGAGGAGTGGGATGCGATGAGAAGGAGAGGAAATCGAGTTGGGCCAAACCGTCTCCGCAGTTTGGATCTGGTAGCCCAATCACACGGAAGCCCAGAGCGACCATCTTTCTTCTCACCGAAGAATCAAGTGGGGAAGATACTGTTGCAGAAAATAGATAGAGACAGAGAGGAAGATACAGCGTTTTTGCATGAGGGCAAAGATGCTTGGAGAATGTGGAAGGATATTAGAGATAGAGAAGTGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTGTCTGGAGCATCAGATGCATCAGCTGCTGTTTTTGATATTCAATGTGCAACTCACTCCGAGGGCCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATCAATATGCAATATCCTCAGCCATATGGTATCCCGTTGATACTGGATTGTTTGTCACCGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGCATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCTCAGCTTGGGAGACGTCCCCCTATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCAGCCACAGGTAAACTGCCGGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTAGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGACGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAACCATTGCAATTAGCCACATCTGAGGATTCAGCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACCGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGAAACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCGACTGCAGACAGGGATAACTGGAGCGACTGACTGTCATCGACAAGGAAGTTTGGTTTCAATGCTGATGCCATCCATCAGACTCTGCTCACCATGTACATAA 1722 46.63 MAAVGGTRSGDRRSVELRMICKWNRGGRRWEEWDAMRRRGNRVGPNRLRSLDLVAQSHGSPERPSFFSPKNQVGKILLQKIDRDREEDTAFLHEGKDAWRMWKDIRDREVGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQCATHSEGLIAKHQCIFAVDKQHEHGHQYAISSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVAWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSATGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTRDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSEDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNRLQTGITGATDCHRQGSLVSMLMPSIRLCSPCT 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28258967 28265758 - CePI673135_08g017090.1 Cec08g1709 210351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1709 573 ProSitePatterns Trp-Asp (WD) repeats signature. 304 318 IPR019775 -
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 525 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 239 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 FunFam Transducin/WD40 repeat-like superfamily protein 102 364 - -
Cec08g1709 573 Pfam WD domain, G-beta repeat 280 317 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 Pfam WD domain, G-beta repeat 488 525 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 Pfam WD domain, G-beta repeat 198 230 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 Pfam WD domain, G-beta repeat 408 438 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Cec08g1709 573 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Cec08g1709 573 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 233 - -
Cec08g1709 573 ProSitePatterns Trp-Asp (WD) repeats signature. 425 439 IPR019775 -
Cec08g1709 573 FunFam Excision repair cross-complementation group 8 386 528 - -
Cec08g1709 573 SMART WD40_4 185 230 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 SMART WD40_4 400 438 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 SMART WD40_4 277 317 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 SMART WD40_4 132 172 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 SMART WD40_4 486 525 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 SUPERFAMILY WD40 repeat-like 139 529 IPR036322 GO:0005515(InterPro)
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 319 - -
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 442 - -
Cec08g1709 573 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 101 531 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(PANTHER)|GO:0006283(InterPro)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Cec08g1709 573 Gene3D - 101 528 IPR015943 GO:0005515(InterPro)
Cec08g1709 573 MobiDBLite consensus disorder prediction 357 394 - -
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 326 IPR001680 GO:0005515(InterPro)
Cec08g1709 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1709 K10570 - - csv:101209203 858.211
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36