Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1724 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAACTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGGATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGAGCGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTATTCATTTGCCCAATCTCGCTCGAACCCATGCAAGATCCAGTGACCCTCTGCTCCGGGCAGACCTACGAGCGTTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCCGTCACACCGAATCGGACTCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAAAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTCGCTCTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTTGTGAATTTGGATCTCGATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAACGTTTCAAGTCTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGATACTCAAATGGTGTAACCGCGGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAACAAATCAGGAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCTAACTTAAACGCCGATTGTTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCGGAAGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTTAAGCTAGCGCCGGAGGAATGTGCGATGCTGGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCTGATTCAATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1365 47.18 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGAKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRYSNGVTAGLSLLRTLCSNEQIRKQLVSIGAVAKLGGALSNLNADCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAMLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSMFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28355322 28356686 + CePI673135_08g017240.1 Cec08g1724 210366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1724 454 SUPERFAMILY RING/U-box 66 140 - -
Cec08g1724 454 CDD RING-Ubox_PUB 71 123 IPR045210 -
Cec08g1724 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Cec08g1724 454 PANTHER WDSAM1 PROTEIN 66 447 IPR045185 GO:0061630(InterPro)
Cec08g1724 454 Gene3D - 143 452 IPR011989 -
Cec08g1724 454 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec08g1724 454 SUPERFAMILY ARM repeat 158 440 IPR016024 -
Cec08g1724 454 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec08g1724 454 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2899 Cec-Chr5:39103859 Cec08g1724 Cec-Chr8:28355322 2.80E-163 dispersed
Cec08g1724 Cec-Chr8:28355322 Cec04g1242 Cec-Chr4:31977467 2.20E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1724 - - - 0.0