Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1725 ATGGATCCATTTAGAGGACAAGGTGGCATTCAAATGCTATTAACTGCAGAACAAGATGCCCAACAAGTCGTTTCCACAGCTAGAAACATGAAGATGGCGAGACTGAAACAAGCTAAAGAAGAAGCTGAAAGGGAAGTGGCGCGTTATCGTGCTCACTTGGAGGCTGAATATCAGAAGAAGGTTTCTGAGTCAAGTTCTGGGTCCTATACACAACGGCTGGAAGAGGAAACCAAGGTTAAGATCGAGAATTTGAAGGAATCATCCAACTTAGAACAAGGGGAAGATTAG 288 43.75 MDPFRGQGGIQMLLTAEQDAQQVVSTARNMKMARLKQAKEEAEREVARYRAHLEAEYQKKVSESSSGSYTQRLEEETKVKIENLKESSNLEQGED 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28360705 28361465 + CePI673135_08g017250.1 Cec08g1725 210367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1725 95 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 1 89 IPR005124 GO:0016471(InterPro)|GO:0016471(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec08g1725 95 Gene3D - 3 94 - -
Cec08g1725 95 Pfam Vacuolar (H+)-ATPase G subunit 7 90 IPR005124 GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec08g1725 95 Coils Coil 25 59 - -
Cec08g1725 95 FunFam V-type proton ATPase subunit G 3 94 - -
Cec08g1725 95 NCBIfam V-type ATPase subunit G 8 90 IPR005124 GO:0016471(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1725 K02152 - - csv:101222806 159.458
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g622 . . . . . . . . Cmo05g00134 Cmo12g00545 Cma01g01775 Cma09g00301 Car01g01385 Car12g00549 Sed11g0913 Cpe06g00211 Cpe07g00525 Bhi04g00447 Tan02g1715 Cmetu03g2084 . Hepe08g1345 . Lcy13g2147 Cla08g01635 Cam08g2137 Cec08g1725 Cco08g1844 Clacu08g1825 . Cre08g1608 . . . . Lsi04g01467 Csa04g02494 . Cme03g02117 . . . . . . . . Sed01g2733 Cmo01g01834 Cmo09g00300 Cma12g00605 Cma05g00129 Car05g00111 Car09g00253 Cpe11g00111 Cpe02g00230 Bhi09g03207 Tan01g4675 Cmetu07g0012 . Hepe01g1842 Mch11g0376 . . . . . . . . Lsi08g01540 Csa02g01879 Chy07g00203 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001804 2 5 1 1 0 2 3 2 1 2 0 2 1 2 2 2 2 2 3 2 2 3 1 2 2 0 2 2 8 3 62