Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1733 ATGAAAATGGAGGTTACTTCTTCTGATCATCCTTACAACCAACACCATTCTCACCCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATAATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTACCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATACTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCGGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGCGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGGGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACTGAGCAGTGATACGACCGTCGTTCCCTACGACTCCTCGGTTGCGGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAATGGTGCGAATGGGAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATCGTATCCGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGGATCGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCGTCATCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCATTTGGAAAGCCCCCACCCTTGATGGCATCAAAGCTAATTGGTGCAACGAGCGGGGTTGGAGTCGGAGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA 1968 45.58 MKMEVTSSDHPYNQHHSHPASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNTESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGGALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVELSSDTTVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVSGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28445373 28448377 + CePI673135_08g017330.1 Cec08g1733 210375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1733 655 ProSiteProfiles AP2/ERF domain profile. 378 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 SUPERFAMILY DNA-binding domain 275 344 IPR016177 GO:0003677(InterPro)
Cec08g1733 655 CDD AP2 377 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 Gene3D AP2/ERF domain 378 438 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 Gene3D AP2/ERF domain 275 344 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 MobiDBLite consensus disorder prediction 217 238 - -
Cec08g1733 655 FunFam AP2-like ethylene-responsive transcription factor ANT 275 344 - -
Cec08g1733 655 MobiDBLite consensus disorder prediction 217 258 - -
Cec08g1733 655 CDD AP2 275 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 Pfam AP2 domain 377 428 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 Pfam AP2 domain 276 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 MobiDBLite consensus disorder prediction 1 20 - -
Cec08g1733 655 SUPERFAMILY DNA-binding domain 377 438 IPR016177 GO:0003677(InterPro)
Cec08g1733 655 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 174 497 - -
Cec08g1733 655 SMART rav1_2 378 442 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 SMART rav1_2 276 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 ProSiteProfiles AP2/ERF domain profile. 276 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1733 655 FunFam AP2-like ethylene-responsive transcription factor 377 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1733 Cec-Chr8:28445373 Cec10g0760 Cec-Chr10:11464649 2.60E-85 dispersed
Cec05g2889 Cec-Chr5:39038248 Cec08g1733 Cec-Chr8:28445373 3.00E-139 transposed
Cec07g1525 Cec-Chr7:30873012 Cec08g1733 Cec-Chr8:28445373 5.60E-110 transposed
Cec11g0922 Cec-Chr11:14235145 Cec08g1733 Cec-Chr8:28445373 4.30E-93 transposed
Cec04g1474 Cec-Chr4:34282342 Cec08g1733 Cec-Chr8:28445373 2.10E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30130 PF00847 AP2 1.50E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1733 K09285 - csv:101212797 1157.13