Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1738 ATGGCTGGGACAGCTAGCCATGATTCTCATGGTCAAGATTCTTCTTACTTTTTGGGATGGCAAGAATATGAGAAGAACCCATATCACCCTACTCGAAACCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAACAAGCTATGTTATGACTTATTGGATGAGTGGATGGAGAACAATCCAGACGCTTTGGGATTGAGAAGAAATGGAGTGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTATCATGGCTTGCCTGCTTTTAAAAAGGTGTTGGTTGAATTAATGGAGGAAATACGAGGAAAGAAAGTGAGGTTTGATATGAATAAACTGGTCCTCACCGCTGGTGCAACTTCTGCGAATGAGATCCTAATGTTTTGTCTTGCCGAACCTGGTGAAGCTTTCCTTGTTCCCACTCCTTACTATCCTGGGTTTGACAGAGACTTAAAATGGCGTACAGGCGTACGAATAATTCCAATTCAATGTTCAAGTTCAAACGGTTTCCGAATCACCGCGGCGGCAATGGAAGAAGCGAGGGACCGAGCCCAAAAGCTGAAATTACGAGTCAAAGGGGTTTTAATCACGAACCCATCGAATCCACTGGGCACCACATTGAGCTGCAAGGAGCTGAATTTAGTGGTGAATTTCGCCACAGCCAACGCAATACACATAGTGAGCGACGAGATATATTCGGCCACAGTTTTCTCATCCCCAAATTTCCAAACCATCATGGACCAACGCCTACAAAAATCCCCAATTTGGGAGCGCATCCACGTGGTGTACAGCCTATCCAAGGATCTAGGCTTGCCTGGGTTCCGCGTAGGCATGATTTATTCAAACAACCCCAAAGTAGTGGCTGCAGCTACCAAAATGTCGAGCTTTGGTCTAGTTTCATCTCAGACACAATATTTGGTGTCACAAATGCTAGGAGACACCAAATTCCGAGAGAATTACATGACGGAAATGAAGATGAGGATCAGGAAGAGGAAAGGAATGTTGGAGTTGGGGCTCCGAAAAGCCGGAATCAGGTGTTTGAAAGGGAATGCGGGTTTGTTTTGTTGGGTGGATATGAGGCATCTTTTGAAATATCCAAGTTTCCAACAGGAAATGGAGGTTTGGAAGAGGATTTTGTGTGAGGTTGGGCTTAATGTCTCGCCCGGTTCGGCTTGTCATTGTTCTGAACCGGGTTGGTTCAGAATGTGCTTTGCTAACATGTCGGAACACACTTTGATGGTGGCGATGTGTCGTCTTAAGGCATTTGTGGAGTCTACCTTATCTCTCAAAAGGCCACCGGAAGTTTTCCGACTCGTAGTCGGTAGTCTTCACGAATCTTCATTGCGTGATTTGATTCAACAAGGTTTCGAATTCCGAAAACGTCTGCTATTAGAATCAGCTGAACGCAACTTTTTACATCCGAAGAAGATGACCGACGACGATGGAAAACCGGATAAGGGTAATCAATGGCAATCGTCAAGACCACCAAACCAAGAGAAAGCGGAGGACATGAAACTCTGGGGAATTCTTCTTTTCGGTCTGATCGGTGCCTCTGCCACCACTCTCGCCGTTGGTCAGCTGCGGAGAACTGTTGATTGGGTATATACTCAGTTGAGCAGGTCACAATCATCATGGGGTGGAGGAAGTGGCCGTTCTTTCCGGTCATCATTTCAGGAGGAAGCATGGAAAAAGTATAATCGTAGGCTGCAAGAGGAGTATGAAGAAGAAATGGAAAGGGTGGAGCGCATAAGGCGCATGCAGAATGTATTCAACAGAGAGAGGAACAAATACAAGAGAGGCTACGAAAGCTGGAGAGAGAATGGCCCTGGTGCGTATCATCAACATCACCAGCGAGATGATTGGTATTGGAAGGCCGAGACGTTCTACAGAGAGCAAAGTAACTCTAATAATTATAGGGAAACTCCAAGAGACAGACCAAGTTACTTGTTATCACATCATTATACAGTTTTGGGTCTCAACAGGTGTCGAAAAACACCTTATACCGATGCTGAGATCAAGACAGCATTCCAATCCAAGGCGAAGCAGTTTCATCCAGATCAGAACCAGGATAATAAAGAAGCTGCTGAGGCGAAGTTCAAAGAGGTGATGACATCTTATGAGGCCATAAAGTCAGAAAGAAAGAACAGTAGAGCATAA 2151 45.23 MAGTASHDSHGQDSSYFLGWQEYEKNPYHPTRNPTGIIQMGLAENKLCYDLLDEWMENNPDALGLRRNGVSVFRELALFQDYHGLPAFKKVLVELMEEIRGKKVRFDMNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPGFDRDLKWRTGVRIIPIQCSSSNGFRITAAAMEEARDRAQKLKLRVKGVLITNPSNPLGTTLSCKELNLVVNFATANAIHIVSDEIYSATVFSSPNFQTIMDQRLQKSPIWERIHVVYSLSKDLGLPGFRVGMIYSNNPKVVAAATKMSSFGLVSSQTQYLVSQMLGDTKFRENYMTEMKMRIRKRKGMLELGLRKAGIRCLKGNAGLFCWVDMRHLLKYPSFQQEMEVWKRILCEVGLNVSPGSACHCSEPGWFRMCFANMSEHTLMVAMCRLKAFVESTLSLKRPPEVFRLVVGSLHESSLRDLIQQGFEFRKRLLLESAERNFLHPKKMTDDDGKPDKGNQWQSSRPPNQEKAEDMKLWGILLFGLIGASATTLAVGQLRRTVDWVYTQLSRSQSSWGGGSGRSFRSSFQEEAWKKYNRRLQEEYEEEMERVERIRRMQNVFNRERNKYKRGYESWRENGPGAYHQHHQRDDWYWKAETFYREQSNSNNYRETPRDRPSYLLSHHYTVLGLNRCRKTPYTDAEIKTAFQSKAKQFHPDQNQDNKEAAEAKFKEVMTSYEAIKSERKNSRA 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28493495 28502332 - CePI673135_08g017380.1 Cec08g1738 210380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1738 716 SUPERFAMILY PLP-dependent transferases 7 421 IPR015424 -
Cec08g1738 716 CDD AAT_like 74 419 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 256 280 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 288 311 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 132 153 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 40 66 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 186 210 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 222 245 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 73 89 - -
Cec08g1738 716 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 110 130 - -
Cec08g1738 716 SMART dnaj_3 649 712 IPR001623 -
Cec08g1738 716 Coils Coil 564 584 - -
Cec08g1738 716 Gene3D - 60 311 IPR015421 -
Cec08g1738 716 Gene3D DnaJ domain 648 716 IPR036869 -
Cec08g1738 716 MobiDBLite consensus disorder prediction 472 496 - -
Cec08g1738 716 SUPERFAMILY Chaperone J-domain 646 712 IPR036869 -
Cec08g1738 716 CDD DnaJ 651 705 IPR001623 -
Cec08g1738 716 Gene3D Aspartate Aminotransferase, domain 1 26 416 IPR015422 -
Cec08g1738 716 ProSiteProfiles dnaJ domain profile. 650 716 IPR001623 -
Cec08g1738 716 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 262 275 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Cec08g1738 716 Pfam DnaJ domain 651 712 IPR001623 -
Cec08g1738 716 PRINTS DnaJ domain signature 692 712 IPR001623 -
Cec08g1738 716 PRINTS DnaJ domain signature 674 689 IPR001623 -
Cec08g1738 716 Pfam Aminotransferase class I and II 38 414 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cec08g1738 716 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 475 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1738 K01762 - - csv:101213522 706.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1738 Cec-Chr8:28493495 Cec10g0835 Cec-Chr10:16569744 7.40E-171 dispersed
Cec04g1481 Cec-Chr4:34340501 Cec08g1738 Cec-Chr8:28493495 5.80E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104