Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1742 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGCAGGGGAAATTTCTTGTACAATTCAGTACACGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGTTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAGGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAAAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 981 45.77 MEDQYKVHGDRCRGNFLYNSVHVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAFYFDGHFMGDSHYRLGP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28552386 28557991 - CePI673135_08g017420.1 Cec08g1742 210384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1742 326 CDD homeodomain 234 286 IPR001356 GO:0003677(InterPro)
Cec08g1742 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 292 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec08g1742 326 SMART ELK_2 202 223 IPR005539 GO:0003677(InterPro)
Cec08g1742 326 SMART ELK_2 114 134 IPR005539 GO:0003677(InterPro)
Cec08g1742 326 SMART HOX_1 224 289 IPR001356 GO:0003677(InterPro)
Cec08g1742 326 Pfam KNOX2 domain 112 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec08g1742 326 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677(InterPro)
Cec08g1742 326 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec08g1742 326 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec08g1742 326 MobiDBLite consensus disorder prediction 166 197 - -
Cec08g1742 326 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677(InterPro)
Cec08g1742 326 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Cec08g1742 326 Gene3D - 219 291 - -
Cec08g1742 326 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec08g1742 326 MobiDBLite consensus disorder prediction 174 197 - -
Cec08g1742 326 Pfam ELK domain 202 223 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2778 Cec-Chr5:38185860 Cec08g1742 Cec-Chr8:28552386 2.70E-64 dispersed
Cec08g1397 Cec-Chr8:25771491 Cec08g1742 Cec-Chr8:28552386 6.90E-23 dispersed
Cec08g1742 Cec-Chr8:28552386 Cec08g1841 Cec-Chr8:29286810 2.50E-33 dispersed
Cec05g1945 Cec-Chr5:31502954 Cec08g1742 Cec-Chr8:28552386 4.20E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30133 PF03791 KNOX2 2.50E-23 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1742 - - - 0.0