Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1743 ATGATCACCGAATCAATGCTCCTCAATCCGACGGTTCACATTTCATCCAGGGACTCCCCCGACGATCCCGCCGCCGCATTCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCCAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCGCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAGGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGTAACTAA 921 55.92 MITESMLLNPTVHISSRDSPDDPAAAFPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPGLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28576288 28577208 + CePI673135_08g017430.1 Cec08g1743 210385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1743 306 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
Cec08g1743 306 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872(InterPro)
Cec08g1743 306 PANTHER UNKEMPT FAMILY MEMBER 52 229 IPR045234 -
Cec08g1743 306 SMART c3hfinal6 110 136 IPR000571 GO:0046872(InterPro)
Cec08g1743 306 SMART c3hfinal6 145 168 IPR000571 GO:0046872(InterPro)
Cec08g1743 306 Gene3D - 107 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1743 Cec-Chr8:28576288 Cec11g0201 Cec-Chr11:2165280 2.90E-63 dispersed
Cec03g1649 Cec-Chr3:34662962 Cec08g1743 Cec-Chr8:28576288 5.70E-69 wgd
Cec05g1948 Cec-Chr5:31562905 Cec08g1743 Cec-Chr8:28576288 2.20E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1743 - - - 0.0