Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1758 ATGAATGCTCTGGTGGATATGGCAAGCCCAAATTCTGCTGTTGTGGGTTCTCCAATGTCTACTGCCCTGCAACGAATTGATTTGGGGGATGCTTGTTTAAGTTCCTCTGGTAATGTTGAGTTACAAAATCAGTTGGCAGGAGCCATTCCTATTACTTCTCTCTTTCAGTCCACCTCTCTTGCTCCAGTGAATGCTATTCATGAAAATACGAAGGATTCAACATTTCCAGACCCTCAGTTCCAGCAATTAGAAACCTTTAGAACGTGCATCTTACACAGTTCCTCTAATGCTTCTAATTCTTCATTCGCAAGTTCTCTGATCTGTGAAGGTGATGAGTCTCTTTGTAATGCAAGTATCAAGTGGGAAAATGACAGGTTTCATTGTATTCAGCAACTTTCTAGGGAGAATCCAGAAGGATCAGATTTCCAGACCATCTCATCGGCGGAACACCTGCACCAGAATGGCTGGATGCCATCTAACACTATGAACTCCAATTTCCTGGACCAGTATTCACAGTTGGCTTTTTCTAGTGCTACTCAGCCTTGCTTGAACAGCACCGAATTAGCCTCGAACCTGAATTCGGACAGCTCCAGGGACCTCTCTCTAAGTTATGGATGTAGTAGTCCTGTTCGCCTTTCTCGTGCAATAGCAGGATCAAGATATCTTTCAGTCATTCAGGATGTACTTTCTCAGATTGCAAGCTATCCACTGGAAGGTTCAGAGCAAGTTAGTCATTCAACAACTGCAGCTGGGTTTGTGCCATTCTCATCAAGTTCCCTGGATGATGCTACAATTGAATATGGTTCTGATGTAACTGGTAAATACAGTTTTCAAATGGAGCCTGAATGGCAAAAACTATCTGTTGATGCCAAGAAATCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCCGCTACTGATTTGGACCCTCGCTTGCATACTCGTTATACTCTCCAGACAATCACTTCAGTGTATAGAAACCTGAGGGAGAGGATTACCGATTGTATTATCTCCATGGGGATGCATTCTAACACAATGTGCACGAAAGAGAAGGAAAAATCCTTTGAGGCAACATTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAGAGGAAAGATAATCAATTATGGAGGCCACAGAGAGGCTTGCCTGAAAAATCTGTCTCCGTTTTAAGGGCATGGATGTTTCAGAACTTCCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTGTCTAATTGGTTCATCAATGCTCGTGTCCGGTTGTGGAAACCGATGATCGAAGAGATGTATGCTGAAATGAGCAGAAGAAAATTCAGTCAAAATGAGGAAGAAACTGAAAGAATTCATCAACCCAGATAA 1452 42.84 MNALVDMASPNSAVVGSPMSTALQRIDLGDACLSSSGNVELQNQLAGAIPITSLFQSTSLAPVNAIHENTKDSTFPDPQFQQLETFRTCILHSSSNASNSSFASSLICEGDESLCNASIKWENDRFHCIQQLSRENPEGSDFQTISSAEHLHQNGWMPSNTMNSNFLDQYSQLAFSSATQPCLNSTELASNLNSDSSRDLSLSYGCSSPVRLSRAIAGSRYLSVIQDVLSQIASYPLEGSEQVSHSTTAAGFVPFSSSSLDDATIEYGSDVTGKYSFQMEPEWQKLSVDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYRNLRERITDCIISMGMHSNTMCTKEKEKSFEATFIQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKFSQNEEETERIHQPR 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28693340 28695195 - CePI673135_08g017580.1 Cec08g1758 210400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1758 483 Gene3D - 388 469 - -
Cec08g1758 483 Pfam Associated with HOX 216 351 IPR006563 -
Cec08g1758 483 CDD homeodomain 395 456 IPR001356 GO:0003677(InterPro)
Cec08g1758 483 ProSiteProfiles 'Homeobox' domain profile. 392 455 IPR001356 GO:0003677(InterPro)
Cec08g1758 483 Pfam Homeobox KN domain 412 451 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec08g1758 483 SUPERFAMILY Homeodomain-like 396 464 IPR009057 -
Cec08g1758 483 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 177 470 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec08g1758 483 SMART prehox3 210 352 IPR006563 -
Cec08g1758 483 SMART HOX_1 395 459 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1758 Cec-Chr8:28693340 Cec11g0426 Cec-Chr11:4464511 5.00E-38 dispersed
Cec08g1758 Cec-Chr8:28693340 Cec10g1845 Cec-Chr10:33299423 2.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30135 PF07526 POX 2.40E-22 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1758 - - - 0.0