Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1768 ATGGATGAACTGACAGTGAAACCGGAGGAGTCAGCAGTGCCCACCGGCACGGCGGCGTCTTCTTCTTCTTCATCGTCTTCATCCGTCACTCCCCAGCCGATCGAAGGCCTGCACGATGTCGGTCCACCTCCATTTCTGACGAAGACCTTTGAAATGGTGGAAGATCCATTGACGGACTCCATTGTTTCCTGGAGTAAAGCTCGCAATAGTTTCATCGTTTGGGATTATCACAAATTCTCTAGTACTTTGCTGCCTCGTTACTTCAAACACTCCAATTTCTCTAGTTTCATTCGTCAACTCAATACTTATGGTTTCCGAAAAGTCGATCCTGATCGTTGGGAGTTTGCGAATGAGGGATTCCTGGGAGGACAGCGGAATCTGTTAAGAACCATAAAGAGGAGGAGACATTCACACCAAAGCATCCAGCACCAAGGAAGAACATGTGTGGAATTAGGGCAATTTGGACTGGAAGCCGAACTTGAGAGGTTGATAAGGGACAGAAGCTCGTTAATGGCGGAATTAGTGAGATTGAGGCAGCAACACCAGAGCTCAAGAGAGCAAATAATGGCCATGGAGGATAGGTTAGAGAAAGCAGAGAGTAAACAGAAGCAGATCATGACATTCCTCAGCAAAGCCCTCAAGAATCCTTCCTTCATTCAGAAATTTATTCATAGTAATCAGGGAAGGGAATTGAGAGGCGTTGAAATTGGAAGAAAGCGAAGGTTAACTGCCAGCCCAAGTGTAGAGAATCTCCAGGATGAGAATGTACCTGTAGCTGTTAAACAAGAAGAGCTAGAAACTTCTGAACAAGATATAGAGACGCTGTTAACAGTTAACTTTGAAGACGAGTCAAGCATTGAGATCCCGGACCCTGTTTCTGATTTGGGTCACTCTGCTCATGAGGAATTGGGGATCTTCAGTCAACTTTGGGCTGAAGATCTTATAGCTGGACATCCAGAAGAAGCCATTATTGTTGGTAATCAATCAGACGTTGATGTGGAAGTGGAGGATCTGATTGCTGAACCCTCGGATTGGACCGAGGACTTGCAGGACCTCGTCGATCAAATGGGGTTTCTCCGGTTTCAGCTGGCTCGTGTAGGAAGGAATGGCATGTGCAGAAAAAAGGAGGCCTGCGGGAAGATTCGGTCATTTGCCGATTCACCTGATTTCTTTACCATTAATGAGGTGTTCGCTGATTTTCGTGGAAGATATCAAAAAGCAGCTATCTTTCATAACTTTGGGAAGTCAGTGATCCAGTGA 1260 45.79 MDELTVKPEESAVPTGTAASSSSSSSSSVTPQPIEGLHDVGPPPFLTKTFEMVEDPLTDSIVSWSKARNSFIVWDYHKFSSTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQRNLLRTIKRRRHSHQSIQHQGRTCVELGQFGLEAELERLIRDRSSLMAELVRLRQQHQSSREQIMAMEDRLEKAESKQKQIMTFLSKALKNPSFIQKFIHSNQGRELRGVEIGRKRRLTASPSVENLQDENVPVAVKQEELETSEQDIETLLTVNFEDESSIEIPDPVSDLGHSAHEELGIFSQLWAEDLIAGHPEEAIIVGNQSDVDVEVEDLIAEPSDWTEDLQDLVDQMGFLRFQLARVGRNGMCRKKEACGKIRSFADSPDFFTINEVFADFRGRYQKAAIFHNFGKSVIQ 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28794050 28796446 + CePI673135_08g017680.1 Cec08g1768 210410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1768 419 SUPERFAMILY Winged helix DNA-binding domain 41 134 IPR036390 -
Cec08g1768 419 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1768 419 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1768 419 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1768 419 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1768 419 FunFam Heat shock transcription factor 1 38 135 - -
Cec08g1768 419 Gene3D - 38 135 IPR036388 -
Cec08g1768 419 MobiDBLite consensus disorder prediction 14 33 - -
Cec08g1768 419 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1768 419 Coils Coil 160 201 - -
Cec08g1768 419 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 271 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cec08g1768 419 SMART hsfneu3 41 134 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec08g1768 419 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1768 K09419 - - csv:101219171 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0080 Cec-Chr7:817781 Cec08g1768 Cec-Chr8:28794050 2.10E-65 dispersed
Cec08g1768 Cec-Chr8:28794050 Cec10g0148 Cec-Chr10:1430056 2.10E-56 dispersed
Cec08g1768 Cec-Chr8:28794050 Cec05g0572 Cec-Chr5:4654143 3.20E-65 transposed
Cec08g1768 Cec-Chr8:28794050 Cec09g0708 Cec-Chr9:6318801 3.20E-65 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0572 . 37 237 HSF AT4G17750 59.6 2.3e-62 236.9
Cec09g0708 . 76 317 HSF AT4G17750 51.0 1.8e-59 227.3
Cec08g1768 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cec03g0671 . 13 158 HSF AT4G17750 56.1 3.8e-41 166.4
Cec01g0295 . 352 490 HSF AT4G17750 56.8 2.7e-39 160.2
Cec08g1659 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cec05g2220 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cec05g0572 . 38 242 HSF AT5G16820 57.0 3.6e-60 229.6
Cec07g0080 . 41 262 HSF AT5G16820 52.6 2.3e-59 226.9
Cec09g0708 . 77 289 HSF AT5G16820 54.0 5.3e-56 215.7
Cec08g1768 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cec04g2104 . 62 244 HSF AT5G16820 50.3 1.5e-42 171.0
Cec03g0671 . 9 150 HSF AT5G16820 57.2 4.4e-42 169.5
Cec06g0919 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cec02g1911 . 13 188 HSF AT5G16820 50.3 3.7e-41 166.4
Cec10g0148 . 13 515 HSF AT1G32330 53.0 1.1e-120 430.6
Cec05g0572 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cec09g0708 . 65 285 HSF AT1G32330 51.8 9.7e-58 221.5
Cec07g0080 . 27 226 HSF AT1G32330 52.6 6.3e-57 218.8
Cec08g1768 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cec08g1659 . 20 117 HSF AT1G32330 72.4 2.9e-38 156.8
Cec05g2220 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Cec07g0080 . 41 262 HSF AT3G02990 53.1 2.8e-62 236.5
Cec05g0572 . 38 241 HSF AT3G02990 57.6 1.8e-61 233.8
Cec09g0708 . 77 300 HSF AT3G02990 52.4 1.9e-58 223.8
Cec08g1768 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cec06g0919 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cec03g0671 . 9 158 HSF AT3G02990 54.3 1.4e-40 164.5
Cec05g0572 . 25 287 HSF AT2G26150 52.3 1.5e-68 256.9
Cec09g0708 . 65 284 HSF AT2G26150 54.3 5.0e-64 241.9
Cec10g0148 . 8 243 HSF AT2G26150 55.7 3.0e-61 232.6
Cec03g0671 . 5 156 HSF AT2G26150 51.3 2.3e-40 163.3
Cec02g1911 . 2 189 HSF AT4G18880 52.1 5.6e-51 198.7
Cec05g0355 . 6 462 HSF AT4G13980 52.6 8.1e-118 421.0
Cec02g1911 . 4 183 HSF AT4G13980 50.6 1.7e-43 174.1
Cec05g0572 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cec08g1768 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cec05g0572 . 26 354 HSF AT3G22830 50.1 1.8e-89 326.6
Cec07g0080 . 16 350 HSF AT3G22830 51.2 6.4e-87 318.2
Cec08g1768 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cec10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cec03g0671 . 13 158 HSF AT3G22830 52.0 1.9e-38 157.1
Cec09g0708 . 64 375 HSF AT3G51910 51.4 8.7e-72 267.3
Cec07g0080 . 26 322 HSF AT3G51910 52.2 1.1e-69 260.4
Cec08g1768 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cec08g1768 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cec02g1911 . 5 140 HSF AT3G63350 56.6 3.8e-38 155.6
Cec11g0180 . 32 261 HSF AT5G54070 50.2 3.2e-52 202.6
Cec04g1370 . 46 334 HSF AT4G36990 52.4 1.0e-70 263.8
Cec05g0957 . 589 696 HSF AT4G36990 64.8 3.9e-38 155.6
Cec08g1659 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cec01g0295 . 391 711 HSF AT4G11660 51.8 2.1e-79 293.1
Cec08g1659 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cec04g1370 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cec03g1299 . 20 119 HSF AT4G11660 68.0 1.0e-38 157.9
Cec10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cec04g0460 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cec10g1593 . 14 222 HSF AT2G41690 55.3 1.0e-47 187.2
Cec08g1659 . 9 373 HSF AT1G46264 52.2 5.0e-88 321.6
Cec05g2220 . 1 239 HSF AT1G46264 63.8 6.3e-83 304.7
Cec10g0148 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cec02g1911 . 5 115 HSF AT1G46264 63.1 5.2e-37 152.1
Cec10g1593 . 21 118 HSF AT1G46264 69.4 5.2e-37 152.1
Cec05g0572 . 37 237 HSF AT4G17750 59.6 2.3e-62 236.9
Cec09g0708 . 76 317 HSF AT4G17750 51.0 1.8e-59 227.3
Cec08g1768 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cec03g0671 . 13 158 HSF AT4G17750 56.1 3.8e-41 166.4
Cec01g0295 . 352 490 HSF AT4G17750 56.8 2.7e-39 160.2
Cec08g1659 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cec05g2220 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cec05g0572 . 38 242 HSF AT5G16820 57.0 3.6e-60 229.6
Cec07g0080 . 41 262 HSF AT5G16820 52.6 2.3e-59 226.9
Cec09g0708 . 77 289 HSF AT5G16820 54.0 5.3e-56 215.7
Cec08g1768 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cec04g2104 . 62 244 HSF AT5G16820 50.3 1.5e-42 171.0
Cec03g0671 . 9 150 HSF AT5G16820 57.2 4.4e-42 169.5
Cec06g0919 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cec02g1911 . 13 188 HSF AT5G16820 50.3 3.7e-41 166.4
Cec10g0148 . 13 515 HSF AT1G32330 53.0 1.1e-120 430.6
Cec05g0572 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cec09g0708 . 65 285 HSF AT1G32330 51.8 9.7e-58 221.5
Cec07g0080 . 27 226 HSF AT1G32330 52.6 6.3e-57 218.8
Cec08g1768 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cec08g1659 . 20 117 HSF AT1G32330 72.4 2.9e-38 156.8
Cec05g2220 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Cec07g0080 . 41 262 HSF AT3G02990 53.1 2.8e-62 236.5
Cec05g0572 . 38 241 HSF AT3G02990 57.6 1.8e-61 233.8
Cec09g0708 . 77 300 HSF AT3G02990 52.4 1.9e-58 223.8
Cec08g1768 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cec06g0919 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cec03g0671 . 9 158 HSF AT3G02990 54.3 1.4e-40 164.5
Cec05g0572 . 25 287 HSF AT2G26150 52.3 1.5e-68 256.9
Cec09g0708 . 65 284 HSF AT2G26150 54.3 5.0e-64 241.9
Cec10g0148 . 8 243 HSF AT2G26150 55.7 3.0e-61 232.6
Cec03g0671 . 5 156 HSF AT2G26150 51.3 2.3e-40 163.3
Cec02g1911 . 2 189 HSF AT4G18880 52.1 5.6e-51 198.7
Cec05g0355 . 6 462 HSF AT4G13980 52.6 8.1e-118 421.0
Cec02g1911 . 4 183 HSF AT4G13980 50.6 1.7e-43 174.1
Cec05g0572 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cec08g1768 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cec05g0572 . 26 354 HSF AT3G22830 50.1 1.8e-89 326.6
Cec07g0080 . 16 350 HSF AT3G22830 51.2 6.4e-87 318.2
Cec08g1768 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cec10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cec03g0671 . 13 158 HSF AT3G22830 52.0 1.9e-38 157.1
Cec09g0708 . 64 375 HSF AT3G51910 51.4 8.7e-72 267.3
Cec07g0080 . 26 322 HSF AT3G51910 52.2 1.1e-69 260.4
Cec08g1768 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cec08g1768 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cec02g1911 . 5 140 HSF AT3G63350 56.6 3.8e-38 155.6
Cec11g0180 . 32 261 HSF AT5G54070 50.2 3.2e-52 202.6
Cec04g1370 . 46 334 HSF AT4G36990 52.4 1.0e-70 263.8
Cec05g0957 . 589 696 HSF AT4G36990 64.8 3.9e-38 155.6
Cec08g1659 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cec01g0295 . 391 711 HSF AT4G11660 51.8 2.1e-79 293.1
Cec08g1659 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cec04g1370 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cec03g1299 . 20 119 HSF AT4G11660 68.0 1.0e-38 157.9
Cec10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cec04g0460 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cec10g1593 . 14 222 HSF AT2G41690 55.3 1.0e-47 187.2
Cec08g1659 . 9 373 HSF AT1G46264 52.2 5.0e-88 321.6
Cec05g2220 . 1 239 HSF AT1G46264 63.8 6.3e-83 304.7
Cec10g0148 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cec02g1911 . 5 115 HSF AT1G46264 63.1 5.2e-37 152.1
Cec10g1593 . 21 118 HSF AT1G46264 69.4 5.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006629 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30138 PF00447 HSF_DNA-bind 8.50E-31 CL0123 Cec TF