Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1802 ATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTCAGGGAGAGAAAAGATGGATATGATATCGTAATCAGTGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGATGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTGTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTACAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACACACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATACGCTGTGAAGTTGATAGGAAAAGGGTTGTCCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGACAACTCCAACTGGTGCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCTTCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1755 41.82 MENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGCDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIRCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDCSQQMVHLNLPTTPTGAFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGFFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29056137 29058942 - CePI673135_08g018020.1 Cec08g1802 210444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1802 584 Gene3D - 17 171 - -
Cec08g1802 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 338 IPR045279 GO:0009736(InterPro)
Cec08g1802 584 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Cec08g1802 584 SUPERFAMILY CheY-like 16 141 IPR011006 -
Cec08g1802 584 FunFam Two-component response regulator 17 172 - -
Cec08g1802 584 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Cec08g1802 584 Gene3D - 194 257 - -
Cec08g1802 584 FunFam Two-component response regulator 194 257 - -
Cec08g1802 584 PIRSF RR_ARR_type-B 1 519 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cec08g1802 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Cec08g1802 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Cec08g1802 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Cec08g1802 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cec08g1802 584 CDD REC_typeB_ARR-like 19 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1400 Cec-Chr6:27465332 Cec08g1802 Cec-Chr8:29056137 5.00E-71 dispersed
Cec08g1802 Cec-Chr8:29056137 Cec11g0360 Cec-Chr11:3814227 4.50E-65 dispersed
Cec08g1802 Cec-Chr8:29056137 Cec05g0752 Cec-Chr5:6209066 1.30E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30140 PF00072 Response_reg 1.20E-24 CL0304 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1802 K14491 - csv:101204370 1105.51