Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1811 ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTGTCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGCCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACACACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTGCAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGAAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAACGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTATCCTGCCGAAAAGGCTCCCGGTGTTAG 1170 47.95 MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29105402 29107541 + CePI673135_08g018110.1 Cec08g1811 210453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Cec08g1811 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cec08g1811 389 PANTHER PECTATE LYASE 18-RELATED 26 386 IPR045032 GO:0030570(InterPro)
Cec08g1811 389 Pfam Pectate lyase 127 304 IPR002022 -
Cec08g1811 389 SUPERFAMILY Pectin lyase-like 21 383 IPR011050 -
Cec08g1811 389 FunFam Pectate lyase 40 382 - -
Cec08g1811 389 Gene3D - 40 382 IPR012334 -
Cec08g1811 389 SMART amb_all 115 312 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0324 Cec-Chr3:3676051 Cec08g1811 Cec-Chr8:29105402 7.70E-189 dispersed
Cec05g2688 Cec-Chr5:37456422 Cec08g1811 Cec-Chr8:29105402 2.40E-132 dispersed
Cec07g0213 Cec-Chr7:2141086 Cec08g1811 Cec-Chr8:29105402 4.50E-171 dispersed
Cec08g0815 Cec-Chr8:19998474 Cec08g1811 Cec-Chr8:29105402 1.50E-141 dispersed
Cec08g1811 Cec-Chr8:29105402 Cec09g2059 Cec-Chr9:37643072 2.40E-184 dispersed
Cec08g1811 Cec-Chr8:29105402 Cec05g0410 Cec-Chr5:3382931 4.30E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1811 K01728 - csv:101208076 724.161