Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0023 ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAGTTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGATACTCTACTGTTAAATTTTCAGGTTTCAAAGGGAAGTTGCGGACCAAAAGAAAAGTGCAATGGAATCCTGGCTCAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGATGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTGATGTACTGATTAATATTATGAACCAGAATATTAGCAGAATGGAACGTGGTGGTAAGATTTGGGGCTTGTTTCTCCAACTCAAAGAATTTAATTGGTGTAGGGCATTGGATTGTTTGGGCAAAATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG 1116 44.09 MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEDTLLLNFQVSKGSCGPKEKCNGILAQGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGGMVFYSDVLINIMNQNISRMERGGKIWGLFLQLKEFNWCRALDCLGKMSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 237917 244169 - CePI673135_09g000230.1 Cec09g0023 210533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0023 371 SMART prof_2 241 371 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 Gene3D Dynein light chain 2a, cytoplasmic 239 370 - -
Cec09g0023 371 PRINTS Profilin signature 243 252 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Profilin signature 353 370 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Profilin signature 304 318 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Profilin signature 340 353 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Profilin signature 261 270 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Profilin signature 280 300 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 SUPERFAMILY Profilin (actin-binding protein) 242 369 IPR036140 -
Cec09g0023 371 CDD PROF 242 369 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 MobiDBLite consensus disorder prediction 130 171 - -
Cec09g0023 371 MobiDBLite consensus disorder prediction 150 171 - -
Cec09g0023 371 PANTHER DNA-DIRECTED RNA POLYMERASE III 1 193 IPR024661 GO:0005666(PANTHER)|GO:0006383(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 357 370 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 292 306 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 344 357 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 324 339 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 267 280 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 241 254 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 PRINTS Plant profilin signature 311 320 IPR005455 GO:0003779(InterPro)
Cec09g0023 371 Pfam Profilin 241 369 IPR048278 GO:0003779(InterPro)
Cec09g0023 371 FunFam Profilin 241 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0023 Cec-Chr9:237917 Cec11g0212 Cec-Chr11:2303911 2.50E-61 dispersed
Cec11g1559 Cec-Chr11:29869735 Cec09g0023 Cec-Chr9:237917 2.10E-54 wgd
Cec07g1455 Cec-Chr7:30183925 Cec09g0023 Cec-Chr9:237917 3.00E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0023 K05759 - cit:102614190 243.817