Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0068 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCACCGAAGACGTTGATGGCGACGAATAGATTCGTGTGTGAGATATGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGATCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTTAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAACAGCAGCAGCAGCAACAACAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCAGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGTTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGAAGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACAACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCGCCATCAACACCACCACCGCTGCCACTTCCAGCGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCATTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1569 44.3 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNSSSSNNNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGGGAVSCSSSSCTDYGNKAASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNNPATFAAMHHHTAAPAPAINTTTAATSSGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLHSQIQKPWQG 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 572197 575042 - CePI673135_09g000680.1 Cec09g0068 210578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0068 522 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cec09g0068 522 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Cec09g0068 522 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Cec09g0068 522 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Cec09g0068 522 MobiDBLite consensus disorder prediction 46 72 - -
Cec09g0068 522 Gene3D Classic Zinc Finger 144 223 - -
Cec09g0068 522 SMART c2h2final6 166 186 IPR013087 -
Cec09g0068 522 SMART c2h2final6 131 161 IPR013087 -
Cec09g0068 522 SMART c2h2final6 89 111 IPR013087 -
Cec09g0068 522 MobiDBLite consensus disorder prediction 50 64 - -
Cec09g0068 522 MobiDBLite consensus disorder prediction 257 276 - -
Cec09g0068 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cec09g0068 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 489 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec09g0068 522 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cec09g0068 522 Gene3D Classic Zinc Finger 68 139 - -
Cec09g0068 522 FunFam protein indeterminate-domain 12-like 68 137 - -
Cec09g0068 522 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Cec09g0068 522 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0068 Cec-Chr9:572197 Cec10g2045 Cec-Chr10:35188726 2.20E-87 dispersed
Cec05g1973 Cec-Chr5:31759727 Cec09g0068 Cec-Chr9:572197 2.70E-88 wgd
Cec07g1494 Cec-Chr7:30546187 Cec09g0068 Cec-Chr9:572197 1.40E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30149 PF00096 zf-C2H2 0.0053 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0068 K25870 - csv:101220200 706.827